CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LjSGA_034621.1
(
Lotus japonicus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
LjSGA_034621.1
T62522_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_034621.1
YTH
1
87
MYSRQFVGVAEMLGPVDFKKDMKFWKLDNKYNGFFPIKWHIIKDVPNNKFVHIILQNNDNRSVTFSRDTQEIGLKEGLEMLNIFKSY
Links
Other
YTH
family RBPs
Other
Lotus japonicus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LjSGA_073042.1
Lotus japonicus
LjSGA_073042.1
N
0.924
LjSGA_044186.1
Lotus japonicus
LjSGA_044186.1
N
0.891
chr6.CM0885.320.nc
Lotus japonicus
chr6.CM0885.320.nc
N
0.891
chr6.CM0885.260.nc
Lotus japonicus
chr6.CM0885.260.nc
N
0.891
Medtr2g005610
Medicago truncatula
Medtr2g005610
N
0.793
Glyma16g00490.1
Glycine max
Glyma16g00490.1
N
0.793
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.707
MDP0000256033
Malus x domestica
MDP0000256033
N
0.707