Medtr2g005610 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr2g005610 T62450_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g005610.1 YTH 401 491

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.879
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.879
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.859
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.848
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.846
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.793
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.780
SB09G000580 Sorghum bicolor Sb09g000580 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.758
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.758
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
ppa003557m Prunus persica ppa003557m N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703