LjSGA_044186.1 (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LjSGA_044186.1 T62523_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_044186.1 YTH 88 179

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.957
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.957
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.957
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.891
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.859
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.848
MDP0000256033 Malus x domestica MDP0000256033 N 0.761
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.750
SB09G000580 Sorghum bicolor Sb09g000580 N 0.750
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.750
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.750
mgf014829m Mimulus guttatus mgf014829m N 0.750
mgf001716m Mimulus guttatus mgf001716m N 0.750
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.750
mgf019846m Mimulus guttatus mgf019846m N 0.739
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.728
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.728
29765.m000746 Ricinus communis 29765.m000746 N 0.728
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.728
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.728
PK26094.1 Cannabis sativa PK26094.1 N 0.728
ppa003557m Prunus persica ppa003557m N 0.728
MDP0000488248 Malus x domestica MDP0000488248 N 0.728
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.717
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.717
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.707
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.707
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.707
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.707
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.707
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.707
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.707