SB09G000580 (Sorghum bicolor)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Sb09g000580 T62266_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb09g000580.1 YTH 468 558

Links

Other YTH family RBPs
Other Sorghum bicolor RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.945
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.846
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.846
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.846
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.835
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.835
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.835
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.780
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.780
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.772
mgf019846m Mimulus guttatus mgf019846m N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.769
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.758
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.750
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.736
ppa003557m Prunus persica ppa003557m N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
MDP0000256033 Malus x domestica MDP0000256033 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
MDP0000488248 Malus x domestica MDP0000488248 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.714
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
SB07G006330 Sorghum bicolor Sb07g006330 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.707
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703