Glyma16g00490.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma16g00490.1 T62406_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma16g00490.1 YTH 305 395

Links

Other YTH family RBPs
Other Glycine max RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.879
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.879
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.859
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.859
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.846
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.793
mgf014829m Mimulus guttatus mgf014829m N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
MDP0000488248 Malus x domestica MDP0000488248 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
ppa018635m Prunus persica ppa018635m N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703