LjSGA_073042.1 (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LjSGA_073042.1 T62524_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_073042.1 YTH 55 146

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.957
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.957
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.957
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.924
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.859
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.859
MDP0000256033 Malus x domestica MDP0000256033 N 0.783
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.772
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.772
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.772
mgf014829m Mimulus guttatus mgf014829m N 0.772
SB09G000580 Sorghum bicolor Sb09g000580 N 0.772
mgf001716m Mimulus guttatus mgf001716m N 0.772
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.772
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.750
29765.m000746 Ricinus communis 29765.m000746 N 0.750
MDP0000488248 Malus x domestica MDP0000488248 N 0.750
ppa003557m Prunus persica ppa003557m N 0.750
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.750
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.750
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.750
PK26094.1 Cannabis sativa PK26094.1 N 0.750
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.739
mgf019846m Mimulus guttatus mgf019846m N 0.739
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.728
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.728
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.728
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.728
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.728
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.728
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.707
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.707
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.707
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.707