chr6.CM0885.320.nc (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 chr6.CM0885.320.nc T62485_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr6.CM0885.320.nc YTH 242 332

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 1.000
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.957
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.957
LjSGA_034621.1 Lotus japonicus LjSGA_034621.1 N 0.891
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.879
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.879
mgf001716m Mimulus guttatus mgf001716m N 0.780
mgf014829m Mimulus guttatus mgf014829m N 0.780
SB09G000580 Sorghum bicolor Sb09g000580 N 0.780
mgf019846m Mimulus guttatus mgf019846m N 0.780
MDP0000256033 Malus x domestica MDP0000256033 N 0.780
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.758
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.758
29765.m000746 Ricinus communis 29765.m000746 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
ppa003557m Prunus persica ppa003557m N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.725
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703