rbm28 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 XB-GENE-919947 T129711_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
rbm28
M29074_2.00		 Xenopus tropicalis NGWGUAGW JPLE
Sasse et al.(2025)
RM_Xen.tro_XB-GENE-919947 		0.033

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.719
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.719
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.033
(89.49%)

RNA Binding Domains

Protein ID Domain From To Sequence
AAI67360 RRM 3 82
AAI67360 RRM 111 193
AAI67360 RRM 346 435
AAI67360 RRM 498 588

RNA contacting residues

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.746
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.722
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.722
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.719
RBM28 Homo sapiens ENSG00000106344 D 0.719
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.719
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.719
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.719
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.717
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.716
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.715
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.713
RBM28 Canis familiaris ENSCAFG00000001667 I 0.710
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.710
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.709
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.707
RBM28 Equus caballus ENSECAG00000007745 I 0.707
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.707
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.704
Rbm28 Mus musculus ENSMUSG00000029701 I 0.704
RBM28 Felis catus ENSFCAG00000000946 I 0.701