ENSSTOG00000002169 (Ictidomys tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSSTOG00000002169 T087642_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSSTOG00000002169
M13362_2.00		 Ictidomys tridecemlineatus NGWGUAGW JPLE
Sasse et al.(2025)
RM_Ict.tri_ENSSTOG00000002169 		0.007

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.928
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.007
(87.23%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000001933 RRM 3 82
ENSSTOP00000001933 RRM 111 193
ENSSTOP00000001933 RRM 339 428
ENSSTOP00000001933 RRM 492 585

RNA contacting residues

Links

Other RRM family RBPs
Other Ictidomys tridecemlineatus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM28 Equus caballus ENSECAG00000007745 I 0.948
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.945
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.939
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.939
RBM28 Homo sapiens ENSG00000106344 D 0.928
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.928
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.928
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.925
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.922
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.920
Rbm28 Mus musculus ENSMUSG00000029701 I 0.920
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.919
RBM28 Canis familiaris ENSCAFG00000001667 I 0.917
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.917
RBM28 Felis catus ENSFCAG00000000946 I 0.917
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.914
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.911
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.905
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.902
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.899
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.892
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.888
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.885
RBM28 Bos taurus ENSBTAG00000017001 I 0.883
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.883
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.880
RBM28 Echinops telfairi ENSETEG00000007130 I 0.865
RBM28 Microcebus murinus ENSMICG00000000107 I 0.862
RBM28 Sorex araneus ENSSARG00000008303 I 0.836
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.787
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.773
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.771
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.770
RBM28 Erinaceus europaeus ENSEEUG00000002389 I 0.719
rbm28 Xenopus tropicalis XB-GENE-919947 I 0.710