RBM28 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSCAFG00000001667 T077517_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M05909_2.00		 Canis familiaris NGWGUAGW JPLE
Sasse et al.(2025)
RM_Can.fam_ENSCAFG00000001667 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.930
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.930
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.930
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.009
(87.10%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000002431 RRM 3 82
ENSCAFP00000002431 RRM 111 193
ENSCAFP00000002431 RRM 324 413
ENSCAFP00000002431 RRM 476 567

RNA contacting residues

Links

Other RRM family RBPs
Other Canis familiaris RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.977
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.974
RBM28 Felis catus ENSFCAG00000000946 I 0.965
RBM28 Equus caballus ENSECAG00000007745 I 0.945
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.936
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.933
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.930
RBM28 Homo sapiens ENSG00000106344 D 0.930
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.930
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.928
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.928
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.925
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.925
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.925
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.925
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.917
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.910
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.908
Rbm28 Mus musculus ENSMUSG00000029701 I 0.902
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.899
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.898
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.872
RBM28 Bos taurus ENSBTAG00000017001 I 0.872
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.870
RBM28 Echinops telfairi ENSETEG00000007130 I 0.870
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.870
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.861
RBM28 Microcebus murinus ENSMICG00000000107 I 0.849
RBM28 Sorex araneus ENSSARG00000008303 I 0.843
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.794
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.767
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.764
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.747
RBM28 Erinaceus europaeus ENSEEUG00000002389 I 0.723
rbm28 Xenopus tropicalis XB-GENE-919947 I 0.710