RBM28 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSLAFG00000010717 T081710_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M14627_2.00		 Loxodonta africana NGWGUAGW JPLE
Sasse et al.(2025)
RM_Lox.afr_ENSLAFG00000010717 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.928
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.008
(86.64%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000008971 RRM 3 82
ENSLAFP00000008971 RRM 111 193
ENSLAFP00000008971 RRM 329 418
ENSLAFP00000008971 RRM 481 572

RNA contacting residues

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.936
RBM28 Equus caballus ENSECAG00000007745 I 0.934
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.933
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.930
RBM28 Felis catus ENSFCAG00000000946 I 0.930
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.928
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.928
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.928
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.928
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.928
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.928
RBM28 Homo sapiens ENSG00000106344 D 0.928
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.925
RBM28 Canis familiaris ENSCAFG00000001667 I 0.925
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.922
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.920
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.913
RBM28 Echinops telfairi ENSETEG00000007130 I 0.907
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.905
Rbm28 Mus musculus ENSMUSG00000029701 I 0.902
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.896
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.895
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.890
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.875
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.870
RBM28 Bos taurus ENSBTAG00000017001 I 0.867
RBM28 Microcebus murinus ENSMICG00000000107 I 0.867
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.864
RBM28 Sorex araneus ENSSARG00000008303 I 0.843
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.786
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.773
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.770
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.742
RBM28 Erinaceus europaeus ENSEEUG00000002389 I 0.732
rbm28 Xenopus tropicalis XB-GENE-919947 I 0.719