Rbm28 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSRNOG00000005468 T086901_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Rbm28
M23530_2.00		 Rattus norvegicus NGWGUAGW JPLE
Sasse et al.(2025)
RM_Rat.nor_ENSRNOG00000005468 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.902
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.902
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.902
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.009
(88.51%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000059579 RRM 3 82
ENSRNOP00000059579 RRM 111 193
ENSRNOP00000059579 RRM 326 415
ENSRNOP00000059579 RRM 478 571
ENSRNOP00000069435 RRM 3 82
ENSRNOP00000069435 RRM 111 193
ENSRNOP00000069435 RRM 326 415
ENSRNOP00000069435 RRM 458 518

RNA contacting residues

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rbm28 Mus musculus ENSMUSG00000029701 I 0.951
RBM28 Equus caballus ENSECAG00000007745 I 0.911
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.908
RBM28 Canis familiaris ENSCAFG00000001667 I 0.908
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.905
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.905
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.905
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.902
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.902
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.902
RBM28 Homo sapiens ENSG00000106344 D 0.902
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.902
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.902
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.902
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.899
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.899
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.897
RBM28 Felis catus ENSFCAG00000000946 I 0.896
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.893
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.875
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.870
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.859
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.859
RBM28 Bos taurus ENSBTAG00000017001 I 0.856
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.853
RBM28 Echinops telfairi ENSETEG00000007130 I 0.850
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.848
RBM28 Microcebus murinus ENSMICG00000000107 I 0.836
RBM28 Sorex araneus ENSSARG00000008303 I 0.821
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.764
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.761
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.759
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.736
rbm28 Xenopus tropicalis XB-GENE-919947 I 0.709
Rbm28 Dipodomys ordii ENSDORG00000004184 I 0.708
RBM28 Erinaceus europaeus ENSEEUG00000002389 I 0.702