AT3G51950 (Arabidopsis thaliana)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		AT3G51950-TAIR-G T00381_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G51950.1-P CCCH ZF 149 174
AT3G51950.1-P RRM 267 327
AT3G51950.2-P CCCH ZF 149 174
AT3G51950.2-P RRM 267 327

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.000
29223.m000023 Ricinus communis 29223.m000023 N 0.000
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.000
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.000
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.000
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.713
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.000
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.000
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.000
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.793
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.000
MDP0000120462 Malus x domestica MDP0000120462 N 0.793
MDP0000214614 Malus x domestica MDP0000214614 N 0.000
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.793
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.000
mgf003557m Mimulus guttatus mgf003557m N 0.000
PK01281.1 Cannabis sativa PK01281.1 N 0.000
PK20504.1 Cannabis sativa PK20504.1 N 0.000
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.805
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.000
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.000
ppa002383m Prunus persica ppa002383m N 0.759
ppa003564m Prunus persica ppa003564m N 0.000
ppa019338m Prunus persica ppa019338m N 0.713
SB08G001980 Sorghum bicolor Sb08g001980 N 0.793