AT3G51950 (Arabidopsis thaliana)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		AT3G51950-TAIR-G T00381_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G51950.1-P CCCH ZF 149 174
AT3G51950.1-P RRM 267 327
AT3G51950.2-P CCCH ZF 149 174
AT3G51950.2-P RRM 267 327

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 1.000
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.851
30169.m006471 Ricinus communis 30169.m006471 N 0.851
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.851
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.839
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.828
ppa002413m Prunus persica ppa002413m N 0.828
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.828
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.828
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.828
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.828
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.816
mgf002273m Mimulus guttatus mgf002273m N 0.816
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.816
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.816
ppa023263m Prunus persica ppa023263m N 0.816
MDP0000243086 Malus x domestica MDP0000243086 N 0.816
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.816
MDP0000220601 Malus x domestica MDP0000220601 N 0.816
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.816
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.805
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.805
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.805
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.805
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.805
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.805
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.805
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.805
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.805
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.805
MDP0000120231 Malus x domestica MDP0000120231 N 0.805
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.805
SB01G036490 Sorghum bicolor Sb01g036490 N 0.805
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.805
mgf000973m Mimulus guttatus mgf000973m N 0.793
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.793
MDP0000256775 Malus x domestica MDP0000256775 N 0.793
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.793
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.793
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.793
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.793
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.793
SB08G001980 Sorghum bicolor Sb08g001980 N 0.793
MDP0000120462 Malus x domestica MDP0000120462 N 0.793
MDP0000259773 Malus x domestica MDP0000259773 N 0.793
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.793
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.782
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.782
MDP0000164538 Malus x domestica MDP0000164538 N 0.782
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.782
SB02G043180 Sorghum bicolor Sb02g043180 N 0.782
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.782
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.782
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.782
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
30169.m006472 Ricinus communis 30169.m006472 N 0.770
SB05G001540 Sorghum bicolor Sb05g001540 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
mgf014647m Mimulus guttatus mgf014647m N 0.770
ppa002383m Prunus persica ppa002383m N 0.759
PK18074.1 Cannabis sativa PK18074.1 N 0.759
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.759
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.759
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.713
ppa019338m Prunus persica ppa019338m N 0.713
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.713
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.701
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.701