LOC100054316 (Equus caballus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSECAG00000021076 T02538_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.880
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.880
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000018701 CCCH ZF 17 41
ENSECAP00000018701 CCCH ZF 58 73
ENSECAP00000018701 CCCH ZF 175 201
ENSECAP00000018701 CCCH ZF 212 235

Links

Other CCCH ZF family RBPs
Other Equus caballus RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30075.m001186 Ricinus communis 30075.m001186 N 0.000
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 0.000
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.000
cassava24157.valid.m1 Manihot esculenta cassava24157.valid.m1 N 0.000
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.000
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.000
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.000
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.000
XM_002890828.1 Arabidopsis lyrata fgenesh2_kg.1__3230__AT1G30480.1 N 0.000
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.000
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.000
GRMZM2G003527 Zea mays GRMZM2G003527 N 0.000
GRMZM2G145034 Zea mays GRMZM2G145034 N 0.000
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.000
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.000
MDP0000162585 Malus x domestica MDP0000162585 N 0.000
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.000
mgf008467m Mimulus guttatus mgf008467m N 0.000
PDK_20s1603131g002 Phoenix dactylifera PDK_20s1603131g002 N 0.000
PK13606.1 Cannabis sativa PK13606.1 N 0.000
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.000
ppa007087m Prunus persica ppa007087m N 0.000