MBNL1 (Tetraodon nigroviridis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTNIG00000003878 T03479_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.913
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.913
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006481 CCCH ZF 16 40
ENSTNIP00000006481 CCCH ZF 57 72
ENSTNIP00000006481 CCCH ZF 187 213
ENSTNIP00000006481 CCCH ZF 224 247

Links

Other CCCH ZF family RBPs
Other Tetraodon nigroviridis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44002 Xenopus laevis AAH44002 I 0.000
Ame_R011562 Ailuropoda melanoleuca Ame_R011562 I 0.000
Ame_R015210 Ailuropoda melanoleuca Ame_R015210 I 0.000
ESRP1 Anolis carolinensis ENSACAG00000003748 I 0.000
ESRP2 Anolis carolinensis ENSACAG00000009900 I 0.000
ESRP2 Bos taurus ENSBTAG00000004375 I 0.000
LOC788414 Bos taurus ENSBTAG00000021838 I 0.000
ESRP1 Canis familiaris ENSCAFG00000009305 I 0.000
ESRP2 Canis familiaris ENSCAFG00000020320 I 0.000
LOC100386717 Callithrix jacchus ENSCJAG00000000043 I 0.000
LOC100388530 Callithrix jacchus ENSCJAG00000015709 I 0.000
ESRP1 Cavia porcellus ENSCPOG00000012197 I 0.000
esrp1 Danio rerio ENSDARG00000011245 I 0.000
esrp2 Danio rerio ENSDARG00000018814 I 0.000
ESRP2 Dasypus novemcinctus ENSDNOG00000018588 I 0.000
Esrp2 Dipodomys ordii ENSDORG00000000665 I 0.000
ESRP1 Equus caballus ENSECAG00000000784 I 0.000
LOC100066567 Equus caballus ENSECAG00000017375 I 0.000
ESRP1 Erinaceus europaeus ENSEEUG00000001673 I 0.000
ESRP2 Erinaceus europaeus ENSEEUG00000014033 I 0.000
ESRP1 Felis catus ENSFCAG00000009920 I 0.000
ESRP2 Felis catus ENSFCAG00000010419 I 0.000
ESRP2 Homo sapiens ENSG00000103067 D 0.000
ESRP1 Homo sapiens ENSG00000104413 I 0.000
ESRP2 Gasterosteus aculeatus ENSGACG00000016359 N 0.000
ESRP2_CHICK Gallus gallus ENSGALG00000003374 I 0.000
RBM35A Gallus gallus ENSGALG00000015968 I 0.000
ESRP1 Gorilla gorilla ENSGGOG00000003627 I 0.000
ESRP2 Gorilla gorilla ENSGGOG00000010150 I 0.000
ESRP1 Loxodonta africana ENSLAFG00000001498 I 0.000
ESRP2 Loxodonta africana ENSLAFG00000014609 I 0.000
ESRP2 Macropus eugenii ENSMEUG00000014322 I 0.000
ESRP2 Meleagris gallopavo ENSMGAG00000003943 I 0.000
ESRP1 Meleagris gallopavo ENSMGAG00000012042 I 0.000
ESRP1 Microcebus murinus ENSMICG00000008757 I 0.000
ESRP2 Microcebus murinus ENSMICG00000011382 I 0.000
ESRP2 Myotis lucifugus ENSMLUG00000005934 I 0.000
ESRP1 Macaca mulatta ENSMMUG00000021112 I 0.000
ESRP2 Macaca mulatta ENSMMUG00000021846 I 0.000
ESRP2 Monodelphis domestica ENSMODG00000005183 I 0.000
ESRP1 Monodelphis domestica ENSMODG00000007268 I 0.000
Esrp1 Mus musculus ENSMUSG00000040728 I 0.000
Esrp2 Mus musculus ENSMUSG00000084128 I 0.000
ESRP1 Ornithorhynchus anatinus ENSOANG00000004746 I 0.000
ESRP2 Ornithorhynchus anatinus ENSOANG00000010972 I 0.000
ESRP2 Oryctolagus cuniculus ENSOCUG00000001242 I 0.000
ESRP1 Oryctolagus cuniculus ENSOCUG00000001316 I 0.000
ESRP2 Ochotona princeps ENSOPRG00000013401 I 0.000
ESRP2 Procavia capensis ENSPCAG00000005215 I 0.000
ENSPPYG00000007484 Pongo pygmaeus ENSPPYG00000007484 I 0.000
ENSPPYG00000018753 Pongo pygmaeus ENSPPYG00000018753 I 0.000
ESRP2 Pan troglodytes ENSPTRG00000008261 I 0.000
ESRP1 Pan troglodytes ENSPTRG00000020430 I 0.000
ESRP1 Pteropus vampyrus ENSPVAG00000014513 I 0.000
ESRP2 Pteropus vampyrus ENSPVAG00000016626 I 0.000
RGD1560481 Rattus norvegicus ENSRNOG00000008184 I 0.000
Esrp2 Rattus norvegicus ENSRNOG00000023177 I 0.000
ESRP2 Sorex araneus ENSSARG00000014176 I 0.000
ESRP1 Sus scrofa ENSSSCG00000006099 I 0.000
RBM35B Taeniopygia guttata ENSTGUG00000006986 I 0.000
RBM35A Taeniopygia guttata ENSTGUG00000011907 I 0.000
ESRP1 Tetraodon nigroviridis ENSTNIG00000018367 N 0.000
ESRP1 Takifugu rubripes ENSTRUG00000009287 N 0.000
ESRP1 Tarsius syrichta ENSTSYG00000006036 I 0.000
ESRP1 Tursiops truncatus ENSTTRG00000004226 I 0.000
ESRP2 Tursiops truncatus ENSTTRG00000014613 I 0.000
ESRP1 Vicugna pacos ENSVPAG00000006566 I 0.000
esrp1 Xenopus tropicalis ENSXETG00000014667 I 0.000
Q7ZY29 Xenopus laevis Q7ZY29 I 0.000