NP_001072050.1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000012057 T03536_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000030501 CCCH ZF 19 44
ENSTRUP00000030501 CCCH ZF 53 74
ENSTRUP00000030501 CCCH ZF 172 196
ENSTRUP00000030501 CCCH ZF 327 354
ENSTRUP00000030502 CCCH ZF 19 44
ENSTRUP00000030502 CCCH ZF 78 102
ENSTRUP00000030502 CCCH ZF 233 260
ENSTRUP00000030503 CCCH ZF 19 44
ENSTRUP00000030503 CCCH ZF 74 98
ENSTRUP00000030503 CCCH ZF 229 256
ENSTRUP00000030504 CCCH ZF 19 44
ENSTRUP00000030504 CCCH ZF 53 74
ENSTRUP00000030504 CCCH ZF 155 179
ENSTRUP00000030504 CCCH ZF 310 337

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.748
MKRN3 Choloepus hoffmanni ENSCHOG00000004895 N 0.734
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.745
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.717
mkrn1 Danio rerio ENSDARG00000041665 N 0.840
MKRN1 Homo sapiens ENSG00000133606 N 0.745
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.912
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.738
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.745
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.745
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.748
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.736
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.748
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.755
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.740
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.830
MKRN3 Procavia capensis ENSPCAG00000016788 N 0.722
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.712
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.736
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.755
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.745
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.987
MKRN3 Tarsius syrichta ENSTSYG00000009002 N 0.713
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.745