CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
MKRN1
(
Tetraodon nigroviridis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTNIG00000007231
T03487_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000000591
CCCH ZF
19
44
TKHVTCRYFMHGLCKEGDNCRYSHDL
ENSTNIP00000000591
CCCH ZF
70
94
RKQLCPYAAVGECRYGINCAYLHGD
ENSTNIP00000000591
CCCH ZF
225
252
MGRKPCRYFDEGRGICPFGANCFYKHAF
ENSTNIP00000003623
CCCH ZF
19
44
TKHVTCRYFMHGLCKEGDNCRYSHDL
ENSTNIP00000003623
CCCH ZF
53
74
ICKFFQKGNCVFGERCRFDHCK
ENSTNIP00000003623
CCCH ZF
155
179
RKQLCPYAAVGECRYGINCAYLHGD
ENSTNIP00000003623
CCCH ZF
310
337
MGRKPCRYFDEGRGICPFGANCFYKHAF
ENSTNIP00000010033
CCCH ZF
19
44
TKHVTCRYFMHGLCKEGDNCRYSHDL
ENSTNIP00000010033
CCCH ZF
53
74
ICKFFQKGNCVFGERCRFDHCK
ENSTNIP00000010033
CCCH ZF
155
179
RKQLCPYAAVGECRYGINCAYLHGD
ENSTNIP00000010033
CCCH ZF
310
337
MGRKPCRYFDEGRGICPFGANCFYKHAF
Links
Other
CCCH ZF
family RBPs
Other
Tetraodon nigroviridis
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.987
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.922
mkrn1
Danio rerio
ENSDARG00000041665
N
0.840
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.840
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.745
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.745
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.745
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.738
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.738
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.738
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.736
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.736
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.736
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.736
MKRN1
Homo sapiens
ENSG00000133606
N
0.736
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.736
MKRN3
Choloepus hoffmanni
ENSCHOG00000004895
N
0.734
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.731
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.728
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.726
MKRN3
Procavia capensis
ENSPCAG00000016788
N
0.722
MKRN3
Tarsius syrichta
ENSTSYG00000009002
N
0.713
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.708
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.702