MKRN1 (Tetraodon nigroviridis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTNIG00000007231 T03487_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000000591 CCCH ZF 19 44
ENSTNIP00000000591 CCCH ZF 70 94
ENSTNIP00000000591 CCCH ZF 225 252
ENSTNIP00000003623 CCCH ZF 19 44
ENSTNIP00000003623 CCCH ZF 53 74
ENSTNIP00000003623 CCCH ZF 155 179
ENSTNIP00000003623 CCCH ZF 310 337
ENSTNIP00000010033 CCCH ZF 19 44
ENSTNIP00000010033 CCCH ZF 53 74
ENSTNIP00000010033 CCCH ZF 155 179
ENSTNIP00000010033 CCCH ZF 310 337

Links

Other CCCH ZF family RBPs
Other Tetraodon nigroviridis RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.987
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.922
mkrn1 Danio rerio ENSDARG00000041665 N 0.840
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.840
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.745
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.745
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.745
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.738
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.738
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.738
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.736
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.736
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.736
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.736
MKRN1 Homo sapiens ENSG00000133606 N 0.736
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.736
MKRN3 Choloepus hoffmanni ENSCHOG00000004895 N 0.734
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.731
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.728
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.726
MKRN3 Procavia capensis ENSPCAG00000016788 N 0.722
MKRN3 Tarsius syrichta ENSTSYG00000009002 N 0.713
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.708
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.702