CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Oryzias latipes
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSORLG00000012765
T03145_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000015987
CCCH ZF
17
42
TKHVTCRYFMHGLCKEGDNCRYSHDL
ENSORLP00000015987
CCCH ZF
47
72
PATMICKFFQKGNCVYGDRCRFEHSK
ENSORLP00000015987
CCCH ZF
155
179
RKELCPYAAVGECRYGINCAYLHGD
ENSORLP00000015987
CCCH ZF
311
337
RNKPCRYFDEGRGTCPFGSNCFYKHAF
ENSORLP00000015988
CCCH ZF
18
43
TKHVTCRYFMHGLCKEGDNCRYSHDL
ENSORLP00000015988
CCCH ZF
48
73
PATMICKFFQKGNCVYGDRCRFEHSK
ENSORLP00000015988
CCCH ZF
156
180
RKELCPYAAVGECRYGINCAYLHGD
ENSORLP00000015988
CCCH ZF
312
338
RNKPCRYFDEGRGTCPFGSNCFYKHAF
Links
Other
CCCH ZF
family RBPs
Other
Oryzias latipes
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.849
mkrn1
Danio rerio
ENSDARG00000041665
N
0.849
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.840
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.830
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.817
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.817
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.810
MKRN1
Homo sapiens
ENSG00000133606
N
0.800
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.800
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.800
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.800
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.800
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.790
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.790
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.771
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.771
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.762
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.762
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.762
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.752
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.752
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.752
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.752
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.743
MKRN1
Felis catus
ENSFCAG00000013043
N
0.743
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.743
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.743
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.743
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.733
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.724
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.724
AAH74368
Xenopus laevis
AAH74368
N
0.724
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.714
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.714