CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mkrn1
(
Danio rerio
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSDARG00000041665
T02454_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000061069
CCCH ZF
20
45
TKHVTCRYFMHGLCKEGENCRYSHDL
ENSDARP00000061069
CCCH ZF
49
74
KQTMICKFFQKGCCAFGDRCRYEHTK
ENSDARP00000061069
CCCH ZF
165
190
MKKQLCPYAAVGECRYGLNCAYLHGD
ENSDARP00000061069
CCCH ZF
321
348
MGTKPCRYFDEGRGTCPFGANCFYKHAF
Links
Other
CCCH ZF
family RBPs
Other
Danio rerio
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.858
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.849
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.840
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.840
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.802
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.802
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.792
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.783
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.774
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.774
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.774
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.774
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.774
MKRN1
Homo sapiens
ENSG00000133606
N
0.774
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.764
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.764
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.764
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.764
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.755
AAH74368
Xenopus laevis
AAH74368
N
0.755
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.755
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.736
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.726
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.726
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.726
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.726
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.726
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.717
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.717
MKRN1
Felis catus
ENSFCAG00000013043
N
0.717
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.717
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.717
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.708