estExt_Genewise1.C_11309 (Trichoderma virens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_Genewise1.C_11309 T05101_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_11309 CCCH ZF 170 196

Links

Other CCCH ZF family RBPs
Other Trichoderma virens RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.000
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.000
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.000
185736 Helobdella robusta 185736 N 0.741
29733.m000748 Ricinus communis 29733.m000748 N 0.000
29733.m000763 Ricinus communis 29733.m000763 N 0.000
4131 Aureococcus anophagefferens 4131 N 0.000
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.000
AAEL001778 Aedes aegypti AAEL001778 N 0.741
AAH97882 Xenopus laevis AAH97882 N 0.704
AAI33788 Xenopus laevis AAI33788 N 0.704
AAR97523 Xenopus laevis AAR97523 N 0.704
AGAP007068 Anopheles gambiae AGAP007068 N 0.741
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.000
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.000
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.704
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.704
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.704
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.741
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.704
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.704
BC1G_08876 Botrytis cinerea BC1G_08876 N 0.815
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.704
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.704
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.000
Bm1_06930 Brugia malayi Bm1_06930 N 0.741
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.000
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.704
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.704
An02g05190 Aspergillus niger CADANGAG00002035 N 0.741
ANIA_07755 Aspergillus nidulans CADANIAG00000892 N 0.704
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.000
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.000
CBG18314 Caenorhabditis briggsae CBG18314 N 0.704
CBN12332 Caenorhabditis brenneri CBN12332 N 0.704
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.704
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.000
CHGG_06589 Chaetomium globosum CHGG_06589 N 0.741
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.000
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.000
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.741
CJA02847 Caenorhabditis japonica CJA02847 N 0.704
CMU_031370 Cryptosporidium muris CMU_031370 N 0.741
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.741
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.741
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.741
CRE04837 Caenorhabditis remanei CRE04837 N 0.704
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.000
CWC24 Ashbya gossypii CWC24 N 0.000
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.000
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.704
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.741
EDO07311.1 Babesia bovis EDO07311.1 N 0.741
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.000
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.704
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.704
LOC518027 Bos taurus ENSBTAG00000008684 N 0.704
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.704
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.704
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.704
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.704
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.704
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.704
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.704
rnf113a Danio rerio ENSDARG00000037930 N 0.704
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.704
LOC100058519 Equus caballus ENSECAG00000003934 N 0.704
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.704
RNF113A Echinops telfairi ENSETEG00000018346 N 0.704
RNF113A Homo sapiens ENSG00000125352 N 0.704
RNF113B Homo sapiens ENSG00000139797 N 0.704
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.704
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.704
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.704
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.704
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.704
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.704
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.704
RNF113A Microcebus murinus ENSMICG00000001750 N 0.704
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.704
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.000
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.704
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.704
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.704
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.704
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.704
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.704
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.704
RNF113A Procavia capensis ENSPCAG00000014633 N 0.704
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.704
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.704
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.704
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.704
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.704
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.704
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.704
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.704
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.704
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.704
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.704
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.704
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.704
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.704
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.704
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.000
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.741
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.000
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.741
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.741
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.704
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.741
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.000
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.704
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.000
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.704
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.704
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.000
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.000
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.704
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.741
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.000
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.000
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.741
e_gw1.1.717.1 Myceliophthora thermophila e_gw1.1.717.1 N 0.000
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.000
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.741
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.704
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.741
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.704
CG4973 Drosophila melanogaster FBgn0038772 N 0.741
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.741
GK22373 Drosophila willistoni FBgn0067112 N 0.741
GF17636 Drosophila ananassae FBgn0094654 N 0.741
GG23724 Drosophila erecta FBgn0115865 N 0.741
GH22886 Drosophila grimshawi FBgn0130343 N 0.741
GI22714 Drosophila mojavensis FBgn0145441 N 0.741
GL12088 Drosophila persimilis FBgn0149696 N 0.741
GM17684 Drosophila sechellia FBgn0172592 N 0.741
GD19337 Drosophila simulans FBgn0190839 N 0.741
GJ23438 Drosophila virilis FBgn0210538 N 0.704
GE25648 Drosophila yakuba FBgn0242710 N 0.741
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.000
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.000
fgenesh1_pg.sca_2_chr3_3_0000871 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000871 N 0.704
fgenesh1_pg.sca_6_chr9_2_0000705 Nectria haematococca fgenesh1_pg.sca_6_chr9_2_0000705 N 0.704
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.741
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.000
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.000
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.000
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.000
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.704
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.741
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.815
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.000
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.000
Glyma08g39400.1 Glycine max Glyma08g39400.1 N 0.000
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.000
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.704
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.704
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.000
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.000
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.741
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.000
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.704
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.704
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.000
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.000
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.741
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.704
ISCW023200 Ixodes scapularis ISCW023200 N 0.704
rnf-113 Caenorhabditis elegans K01G5.1 N 0.704
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.000
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.000
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.000
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.000
MCYG_07006 Microsporum canis MCYG_07006 N 0.778
MDP0000182690 Malus x domestica MDP0000182690 N 0.000
MDP0000202598 Malus x domestica MDP0000202598 N 0.000
MDP0000274000 Malus x domestica MDP0000274000 N 0.000
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.000
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.000
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.000
mgf009866m Mimulus guttatus mgf009866m N 0.000
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.815
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.741
Minc18333 Meloidogyne incognita Minc18333 N 0.704
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.704
NCLIV_046420 Neospora caninum NCLIV_046420 N 0.000
NCU01954 Neurospora crassa NCU01954 N 0.704
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.000
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.704
Pa_1_20620 Podospora anserina Pa_1_20620 N 0.704
PBANKA_130770 Plasmodium berghei PBANKA_130770 N 0.704
Pc22g15470 Penicillium chrysogenum Pc22g15470 N 0.778
PCHAS_131090 Plasmodium chabaudi PCHAS_131090 N 0.704
PF14_0416 Plasmodium falciparum PF14_0416 N 0.704
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.704
PHUM169980 Pediculus humanus PHUM169980 N 0.704
PITG_04905 Phytophthora infestans PITG_04905 N 0.000
PK05761.1 Cannabis sativa PK05761.1 N 0.000
PKH_126250 Plasmodium knowlesi PKH_126250 N 0.000
PMAA_037770 Penicillium marneffei PMAA_037770 N 0.000
ppa009728m Prunus persica ppa009728m N 0.000
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.704
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.741
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.704
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.741
PVX_118300 Plasmodium vivax PVX_118300 N 0.000
PY01907 Plasmodium yoelii PY01907 N 0.704
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.000
SB04G009270 Sorghum bicolor Sb04g009270 N 0.000
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.704
scaffold_30000002.1 Arabidopsis lyrata scaffold_30000002.1 N 0.000
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.704
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.704
Smp_033590 Schistosoma mansoni Smp_033590 N 0.000
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.741
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.000
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.000
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.000
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.704
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.704
SS1G_11427 Sclerotinia sclerotiorum SS1G_11427 N 0.815
s_444298 Phytophthora sojae s_444298 N 0.000
TA05795 Theileria annulata TA05795 N 0.741
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.741
TERG_03941 Trichophyton rubrum TERG_03941 N 0.741
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.741
TGGT1_081710 Toxoplasma gondii TGGT1_081710 N 0.000
TGME49_026560 Toxoplasma gondii TGME49_026560 N 0.000
TGVEG_067620 Toxoplasma gondii TGVEG_067620 N 0.000
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.704
TP01_0812 Theileria parva TP01_0812 N 0.741
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.741
UM05163 Ustilago maydis UM05163 N 0.741
UREG_07314 Uncinocarpus reesii UREG_07314 N 0.778
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.741
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.741
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.000
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.704
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.704
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.000
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.000
CWC24 Saccharomyces cerevisiae YLR323C N 0.704