estExt_Genewise1Plus.C_sca_2280007 (Lottia gigantea)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_Genewise1Plus.C_sca_2280007 T05152_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_2280007 CCCH ZF 98 123

Links

Other CCCH ZF family RBPs
Other Lottia gigantea RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001499 Ricinus communis 29805.m001499 N 0.769
72073 Helobdella robusta 72073 N 0.885
AAH77826 Xenopus laevis AAH77826 N 0.885
AB07703.1 Alternaria brassicicola AB07703.1 N 0.769
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.885
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.885
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.846
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.731
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.769
BAD89267 Xenopus laevis BAD89267 N 0.885
BC1G_06447 Botrytis cinerea BC1G_06447 N 0.731
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.808
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.731
Bm1_13920 Brugia malayi Bm1_13920 N 0.731
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.769
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.731
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.731
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.769
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.769
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.731
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.731
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.731
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.731
CBG00292 Caenorhabditis briggsae CBG00292 N 0.769
CBN03898 Caenorhabditis brenneri CBN03898 N 0.769
CBN11546 Caenorhabditis brenneri CBN11546 N 0.769
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.769
CJA17052 Caenorhabditis japonica CJA17052 N 0.769
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.808
CRE20408 Caenorhabditis remanei CRE20408 N 0.769
CTRG_02162 Candida tropicalis CTRG_02162 N 0.731
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.808
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.846
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.731
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.846
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.885
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.885
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.885
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.808
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.885
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.885
zc3h15 Danio rerio ENSDARG00000015889 N 0.923
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.846
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.885
LOC100068634 Equus caballus ENSECAG00000017149 N 0.885
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.846
ZC3H15 Felis catus ENSFCAG00000008213 N 0.885
ZC3H15 Homo sapiens ENSG00000065548 N 0.885
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.923
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.885
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.885
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.846
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.885
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.885
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.885
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.885
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.885
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.885
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.885
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.885
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.846
ZC3H15 Oryctolagus cuniculus ENSOCUG00000027731 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.885
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.885
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.923
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.885
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.885
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.885
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.885
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.885
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.846
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.885
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.885
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.885
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.885
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.885
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.885
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.923
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.885
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.885
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.885
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.846
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.769
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.769
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.808
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.846
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.731
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.731
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.769
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.731
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.769
GD10149 Drosophila simulans FBgn0181924 N 0.846
GK21573 Drosophila willistoni FBgn0223565 N 0.846
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.769
fgeneshTA2_pg.C_scaffold_15000146 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_15000146 N 0.731
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.808
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.769
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.731
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.808
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.769
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.731
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.731
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.808
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.731
LOAG_00784 Loa loa LOAG_00784 N 0.731
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.731
MCYG_02954 Microsporum canis MCYG_02954 N 0.731
MDP0000161236 Malus x domestica MDP0000161236 N 0.808
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.731
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.731
Minc08580 Meloidogyne incognita Minc08580 N 0.846
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.885
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.769
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.731
Pc21g03130 Penicillium chrysogenum Pc21g03130 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.769
PGTG_08922 Puccinia graminis PGTG_08922 N 0.731
PHUM521160 Pediculus humanus PHUM521160 N 0.808
PITG_04608 Phytophthora infestans PITG_04608 N 0.769
PK12342.1 Cannabis sativa PK12342.1 N 0.808
PMAA_036360 Penicillium marneffei PMAA_036360 N 0.731
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.769
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.769
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.769
ppa007639m Prunus persica ppa007639m N 0.808
ppa007903m Prunus persica ppa007903m N 0.731
Q6DD06 Xenopus laevis Q6DD06 N 0.885
SB03G039020 Sorghum bicolor Sb03g039020 N 0.731
SS1G_13466 Sclerotinia sclerotiorum SS1G_13466 N 0.731
s_451242 Phytophthora sojae s_451242 N 0.731
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.731
TERG_01412 Trichophyton rubrum TERG_01412 N 0.731
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.731
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.731
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.731
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.731