CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_sca_2280007
(
Lottia gigantea
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1Plus.C_sca_2280007
T05152_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_sca_2280007
CCCH ZF
98
123
PKSVLCQFFRQGQCTKGDKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Lottia gigantea
RBPs
136 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.000
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.000
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.000
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.000
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.000
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.000
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.000
ZNF638
Equus caballus
ENSECAG00000007715
I
0.000
ZNF638
Homo sapiens
ENSG00000075292
D
0.000
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.000
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.000
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.000
Zfml
Mus musculus
ENSMUSG00000030016
N
0.000
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.000
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.000
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.000
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.000
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.000
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.000
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.000