rbm4.1 (Danio rerio)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSDARG00000036386 T07224_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.729
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000052861 RRM 4 66
ENSDARP00000052861 RRM 80 142
ENSDARP00000052861 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Danio rerio RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.736
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.729
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.715
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.736
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.729
RBM4B Canis familiaris ENSCAFG00000012378 I 0.736
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.729
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.736
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.729
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.729
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.729
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.736
rbm4.2 Danio rerio ENSDARG00000055080 N 0.743
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.736
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.715
LOC100058690 Equus caballus ENSECAG00000022940 I 0.729
LOC100058729 Equus caballus ENSECAG00000022987 I 0.736
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.722
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.729
RBM4B Felis catus ENSFCAG00000007394 I 0.736
RBM4B Homo sapiens ENSG00000173914 I 0.736
RBM4 Homo sapiens ENSG00000173933 I 0.729
RBM4 Homo sapiens ENSG00000239306 D 0.729
ENSGACG00000000822 Gasterosteus aculeatus ENSGACG00000000822 I 0.812
LOC425562 Gallus gallus ENSGALG00000018992 I 0.722
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.736
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.729
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.736
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.736
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.722
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.729
RBM4B Microcebus murinus ENSMICG00000003820 I 0.736
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.736
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.736
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.729
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.729
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.729
Rbm4b Mus musculus ENSMUSG00000033760 I 0.736
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.736
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.729
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.729
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.729
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.736
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.722
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.736
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.729
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.736
RBM14-RBM4 Oryzias latipes ENSORLG00000012496 N 0.812
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.722
RBM4B Procavia capensis ENSPCAG00000003414 I 0.736
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.736
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.722
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.729
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.736
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.729
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.736
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.736
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.736
RBM4B Sorex araneus ENSSARG00000010710 I 0.736
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.729
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.736
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.701
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.736
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.715
ENSTNIG00000004821 Tetraodon nigroviridis ENSTNIG00000004821 I 0.819
ENSTRUG00000013334 Takifugu rubripes ENSTRUG00000013334 I 0.806
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.729
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.736
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.729
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.729