RBM4B (Taeniopygia guttata)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSTGUG00000016779 T07345_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.951
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.951
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000017066 RRM 4 66
ENSTGUP00000017066 RRM 80 142
ENSTGUP00000017066 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Taeniopygia guttata RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC425562 Gallus gallus ENSGALG00000018992 I 0.986
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.958
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.958
Rbm4b Mus musculus ENSMUSG00000033760 I 0.958
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.958
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.958
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.958
RBM4B Homo sapiens ENSG00000173914 I 0.958
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.958
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.958
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.958
RBM4B Microcebus murinus ENSMICG00000003820 I 0.958
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.958
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.958
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.958
RBM4B Sorex araneus ENSSARG00000010710 I 0.958
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.958
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.958
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.958
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.958
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.958
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.958
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.958
RBM4B Procavia capensis ENSPCAG00000003414 I 0.958
RBM4B Felis catus ENSFCAG00000007394 I 0.958
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.958
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.958
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.958
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.958
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.958
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.958
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.958
RBM4B Canis familiaris ENSCAFG00000012378 I 0.958
LOC100058729 Equus caballus ENSECAG00000022987 I 0.958
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.951
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.951
RBM4 Homo sapiens ENSG00000173933 I 0.951
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.951
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.951
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.951
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.951
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.951
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.951
RBM4 Homo sapiens ENSG00000239306 D 0.951
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.951
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.951
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.951
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.951
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.951
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.951
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.951
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.951
LOC100058690 Equus caballus ENSECAG00000022940 I 0.951
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.951
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.951
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.951
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.951
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.944
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.938
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.938
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.938
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.917
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.889
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.882
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.812
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.722
AAH82645 Xenopus laevis AAH82645 I 0.722
rbm4.1 Danio rerio ENSDARG00000036386 I 0.715