LOC425562 (Gallus gallus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSGALG00000018992 T07256_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.965
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.965
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000029322 RRM 4 66
ENSGALP00000029322 RRM 80 142
ENSGALP00000029322 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Gallus gallus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.986
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.972
RBM4B Canis familiaris ENSCAFG00000012378 I 0.972
RBM4B Procavia capensis ENSPCAG00000003414 I 0.972
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.972
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.972
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.972
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.972
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.972
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.972
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.972
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.972
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.972
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.972
RBM4B Sorex araneus ENSSARG00000010710 I 0.972
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.972
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.972
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.972
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.972
LOC100058729 Equus caballus ENSECAG00000022987 I 0.972
RBM4B Homo sapiens ENSG00000173914 I 0.972
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.972
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.972
RBM4B Felis catus ENSFCAG00000007394 I 0.972
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.972
Rbm4b Mus musculus ENSMUSG00000033760 I 0.972
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.972
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.972
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.972
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.972
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.972
RBM4B Microcebus murinus ENSMICG00000003820 I 0.972
RBM4 Homo sapiens ENSG00000239306 D 0.965
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.965
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.965
RBM4 Homo sapiens ENSG00000173933 I 0.965
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.965
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.965
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.965
LOC100058690 Equus caballus ENSECAG00000022940 I 0.965
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.965
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.965
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.965
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.965
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.965
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.965
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.965
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.965
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.965
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.965
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.965
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.965
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.965
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.965
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.958
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.958
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.958
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.958
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.951
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.951
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.951
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.931
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.903
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.896
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.826
AAH82645 Xenopus laevis AAH82645 I 0.722
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.722
rbm4.1 Danio rerio ENSDARG00000036386 I 0.722