ENSDORG00000004538 (Dipodomys ordii)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSDORG00000004538 T07230_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.986
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000004247 RRM 4 66
ENSDORP00000004247 RRM 80 142
ENSDORP00000004247 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Dipodomys ordii RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100058690 Equus caballus ENSECAG00000022940 I 0.986
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.986
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.986
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.986
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.986
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.986
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.986
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.986
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.986
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.986
RBM4 Homo sapiens ENSG00000173933 I 0.986
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.986
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.986
RBM4 Homo sapiens ENSG00000239306 D 0.986
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.986
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.986
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.979
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.979
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.979
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.979
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.979
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.979
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.979
RBM4B Canis familiaris ENSCAFG00000012378 I 0.972
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.972
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.972
RBM4B Sorex araneus ENSSARG00000010710 I 0.972
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.972
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.972
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.972
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.972
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.972
LOC100058729 Equus caballus ENSECAG00000022987 I 0.972
RBM4B Felis catus ENSFCAG00000007394 I 0.972
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.972
RBM4B Homo sapiens ENSG00000173914 I 0.972
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.972
Rbm4b Mus musculus ENSMUSG00000033760 I 0.972
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.972
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.972
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.972
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.972
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.972
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.972
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.972
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.972
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.972
RBM4B Microcebus murinus ENSMICG00000003820 I 0.972
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.972
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.972
RBM4B Procavia capensis ENSPCAG00000003414 I 0.972
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.965
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.965
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.965
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.965
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.951
LOC425562 Gallus gallus ENSGALG00000018992 I 0.951
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.951
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.951
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.944
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.938
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.924
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.917
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.910
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.826
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.743
AAH82645 Xenopus laevis AAH82645 I 0.729
AAH73203 Xenopus laevis AAH73203 I 0.715
rbm4.1 Danio rerio ENSDARG00000036386 I 0.715