LOC_Os03g43250 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os03g43250 T11078_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g43250.1 CCHC ZF 122 137

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.000
AAEL002818 Aedes aegypti AAEL002818 I 0.000
AAH44032 Xenopus laevis AAH44032 I 0.000
AGAP002908 Anopheles gambiae AGAP002908 I 0.000
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.000
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.000
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.000
CBG15152 Caenorhabditis briggsae CBG15152 I 0.000
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.000
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.000
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.000
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.000
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.000
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.000
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.000
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.000
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.000
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.000
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.000
u2af2b Danio rerio ENSDARG00000011740 I 0.000
u2af2a Danio rerio ENSDARG00000012505 I 0.000
LOC100050729 Equus caballus ENSECAG00000010110 I 0.000
U2AF2 Homo sapiens ENSG00000063244 D 0.000
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.000
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.000
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.000
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.000
U2af2 Mus musculus ENSMUSG00000030435 I 0.000
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.000
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.000
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.000
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.000
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.000
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.000
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.000
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.000
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.000
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.000
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.000
U2af50 Drosophila melanogaster FBgn0005411 D 0.000
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.000
GF19596 Drosophila ananassae FBgn0096603 I 0.000
GG19328 Drosophila erecta FBgn0111532 I 0.000
GH12033 Drosophila grimshawi FBgn0119512 I 0.000
GI14308 Drosophila mojavensis FBgn0137061 I 0.000
GM13406 Drosophila sechellia FBgn0168337 I 0.000
GD24494 Drosophila simulans FBgn0195829 I 0.000
GJ19364 Drosophila virilis FBgn0206507 I 0.000
GK10063 Drosophila willistoni FBgn0212078 I 0.000
GE15975 Drosophila yakuba FBgn0233531 I 0.000
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.000
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.000
PHUM460480 Pediculus humanus PHUM460480 I 0.000
Smp_019690 Schistosoma mansoni Smp_019690 I 0.000