CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma03g38550.1
(
Glycine max
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Glyma03g38550.1
T14483_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma03g38550.1
CCHC ZF
746
763
GTCFNCGESGHRASDCPN
Links
Other
CCHC ZF
family RBPs
Other
Glycine max
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
62054
Helobdella robusta
62054
I
0.000
63157
Helobdella robusta
63157
N
0.000
90208
Helobdella robusta
90208
I
0.000
AAA81375
Xenopus laevis
AAA81375
I
0.000
AAEL014033
Aedes aegypti
AAEL014033
I
0.000
AAH46942
Xenopus laevis
AAH46942
I
0.000
AAH57704
Xenopus laevis
AAH57704
I
0.000
AAH72134
Xenopus laevis
AAH72134
I
0.000
ACH69784
Xenopus laevis
ACH69784
I
0.000
ACH69785
Xenopus laevis
ACH69785
I
0.000
ACH69786
Xenopus laevis
ACH69786
N
0.000
AGAP004950
Anopheles gambiae
AGAP004950
I
0.000
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.000
Ame_R007421
Ailuropoda melanoleuca
Ame_R007421
I
0.000
Ame_R007822
Ailuropoda melanoleuca
Ame_R007822
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.000
Bm1_27610
Brugia malayi
Bm1_27610
I
0.000
unc-75
Caenorhabditis elegans
C17D12.2
D
0.000
CBG15358
Caenorhabditis briggsae
CBG15358
I
0.000
CJA07020
Caenorhabditis japonica
CJA07020
I
0.000
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.000
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.000
CRE09771
Caenorhabditis remanei
CRE09771
I
0.000
ENSACAG00000010826
Anolis carolinensis
ENSACAG00000010826
N
0.000
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.000
CELF6
Bos taurus
ENSBTAG00000014092
I
0.000
CELF3_BOVIN
Bos taurus
ENSBTAG00000019131
I
0.000
CELF3
Canis familiaris
ENSCAFG00000012794
I
0.000
CELF6
Canis familiaris
ENSCAFG00000017695
N
0.000
CELF3
Callithrix jacchus
ENSCJAG00000007857
I
0.000
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.000
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.000
LOC100386457
Callithrix jacchus
ENSCJAG00000021135
I
0.000
CELF3
Cavia porcellus
ENSCPOG00000003539
I
0.000
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.000
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.000
CELF3
Danio rerio
ENSDARG00000006983
I
0.000
celf3
Danio rerio
ENSDARG00000034668
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
zgc:165603
Danio rerio
ENSDARG00000078665
N
0.000
Celf6
Dipodomys ordii
ENSDORG00000004882
I
0.000
Celf4
Dipodomys ordii
ENSDORG00000007169
N
0.000
CELF3
Equus caballus
ENSECAG00000020365
I
0.000
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.000
CELF6
Felis catus
ENSFCAG00000016249
I
0.000
BRUNOL4
Homo sapiens
ENSG00000101489
D
0.000
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000003274
I
0.000
CELF4
Gasterosteus aculeatus
ENSGACG00000008752
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.000
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.000
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.000
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.000
ENSGALG00000018499
Gallus gallus
ENSGALG00000018499
N
0.000
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.000
CELF4
Gorilla gorilla
ENSGGOG00000013920
I
0.000
CELF6
Gorilla gorilla
ENSGGOG00000015463
I
0.000
ENSGGOG00000021973
Gorilla gorilla
ENSGGOG00000021973
I
0.000
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.000
CELF6
Loxodonta africana
ENSLAFG00000020985
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
CELF3
Loxodonta africana
ENSLAFG00000030147
I
0.000
CELF6
Macropus eugenii
ENSMEUG00000010988
I
0.000
CELF5
Macropus eugenii
ENSMEUG00000013080
I
0.000
CELF6
Meleagris gallopavo
ENSMGAG00000001804
I
0.000
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
CELF3
Monodelphis domestica
ENSMODG00000018897
I
0.000
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
Celf3
Mus musculus
ENSMUSG00000028137
I
0.000
Celf6
Mus musculus
ENSMUSG00000032297
I
0.000
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.000
B7NZE2_RABIT
Oryctolagus cuniculus
ENSOCUG00000003551
I
0.000
CELF6
Oryctolagus cuniculus
ENSOCUG00000021663
I
0.000
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.000
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.000
CELF3
Ochotona princeps
ENSOPRG00000011130
I
0.000
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF4
Oryzias latipes
ENSORLG00000008913
I
0.000
CELF3
Oryzias latipes
ENSORLG00000010447
I
0.000
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.000
CELF4
Procavia capensis
ENSPCAG00000000126
N
0.000
CELF3
Procavia capensis
ENSPCAG00000001623
I
0.000
ENSPPYG00000006615
Pongo pygmaeus
ENSPPYG00000006615
I
0.000
ENSPPYG00000009118
Pongo pygmaeus
ENSPPYG00000009118
I
0.000
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.000
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.000
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.000
CELF6
Pteropus vampyrus
ENSPVAG00000006406
I
0.000
CELF4
Pteropus vampyrus
ENSPVAG00000009204
I
0.000
Brunol6
Rattus norvegicus
ENSRNOG00000010817
I
0.000
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.000
D4A916_RAT
Rattus norvegicus
ENSRNOG00000020875
I
0.000
CELF6
Sus scrofa
ENSSSCG00000001928
I
0.000
CELF3
Sus scrofa
ENSSSCG00000006618
I
0.000
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.000
TNRC4
Taeniopygia guttata
ENSTGUG00000001647
N
0.000
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000008062
I
0.000
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000014225
I
0.000
CELF4
Takifugu rubripes
ENSTRUG00000015481
I
0.000
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.000
CELF6
Tursiops truncatus
ENSTTRG00000002503
I
0.000
CELF4
Tursiops truncatus
ENSTTRG00000016826
I
0.000
celf5
Xenopus tropicalis
ENSXETG00000014344
I
0.000
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.000
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.000
estExt_Genewise1Plus.C_6380019
Capitella teleta
estExt_Genewise1Plus.C_6380019
I
0.000
GF10965
Drosophila ananassae
FBgn0088005
I
0.000
GG13757
Drosophila erecta
FBgn0106020
I
0.000
GH14684
Drosophila grimshawi
FBgn0122160
I
0.000
GI13095
Drosophila mojavensis
FBgn0135852
I
0.000
GL21647
Drosophila persimilis
FBgn0159240
I
0.000
GM24582
Drosophila sechellia
FBgn0179445
I
0.000
GD12651
Drosophila simulans
FBgn0184378
I
0.000
GJ13842
Drosophila virilis
FBgn0201061
I
0.000
GK17101
Drosophila willistoni
FBgn0219100
I
0.000
GE20053
Drosophila yakuba
FBgn0237378
I
0.000
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.000
bru-3
Drosophila melanogaster
FBgn0262350
D
0.000
fgenesh2_pg.C_sca_131000025
Lottia gigantea
fgenesh2_pg.C_sca_131000025
N
0.000
LOAG_05508
Loa loa
LOAG_05508
I
0.000
LOAG_12531
Loa loa
LOAG_12531
N
0.000
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.000
PHUM315130
Pediculus humanus
PHUM315130
I
0.000
Q7ZWM3
Xenopus laevis
Q7ZWM3
I
0.000
Q91579
Xenopus laevis
Q91579
I
0.000
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.000
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.000
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.000
XP_001192920.1
Strongylocentrotus purpuratus
XP_001192920.1
I
0.000
XP_781047.2
Strongylocentrotus purpuratus
XP_781047.2
I
0.000