CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
pcbp1
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000011483
T19758_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000025071
KH
30
76
IGIKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSXETP00000025071
KH
100
163
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.000
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.000
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.000
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.000
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.000
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.000