CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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22086_YPL054W
(
Saccharomyces mikatae
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
22086_YPL054W
T05875_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
22086_YPL054W
CCCH ZF
88
113
YSHVPCKFFKMGNCQAGTSCPFSHSP
22086_YPL054W
CCCH ZF
122
143
LPCKYFAKGNCKFGNKCVNAHT
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces mikatae
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.958
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.939
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.939
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.776
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.760
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.755
orf19.7385
Candida albicans
orf19.7385
N
0.755
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.740
ADR062W
Ashbya gossypii
ADR062W
N
0.740
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.729
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.720
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.714
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.714
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.706