Ame_R012380 (Ailuropoda melanoleuca)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Ame_R012380 T25044_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.985
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.985
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.901
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.901
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.901
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.901
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.901
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R012380 PUF 853 887
Ame_R012380 PUF 889 921
Ame_R012380 PUF 925 956
Ame_R012380 PUF 963 997
Ame_R012380 PUF 999 1033
Ame_R012380 PUF 1035 1069
Ame_R012380 PUF 1071 1101
Ame_R012380 PUF 1117 1148

Links

Other PUF family RBPs
Other Ailuropoda melanoleuca RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH84399 Xenopus laevis AAH84399 N 0.000
Ame_R007806 Ailuropoda melanoleuca Ame_R007806 N 0.000
Ame_R018068 Ailuropoda melanoleuca Ame_R018068 N 0.000
CSDC2 Anolis carolinensis ENSACAG00000004668 N 0.000
Q2NKU4_BOVIN Bos taurus ENSBTAG00000001441 N 0.000
Q08E16_BOVIN Bos taurus ENSBTAG00000004004 N 0.000
CSDC2 Canis familiaris ENSCAFG00000001051 N 0.000
CARHSP1 Canis familiaris ENSCAFG00000019003 N 0.000
LOC100400889 Callithrix jacchus ENSCJAG00000002580 N 0.000
LOC100410498 Callithrix jacchus ENSCJAG00000017286 N 0.000
LOC100395892 Callithrix jacchus ENSCJAG00000022227 N 0.000
CSDC2 Cavia porcellus ENSCPOG00000025372 N 0.000
CARHSP1 Cavia porcellus ENSCPOG00000025492 N 0.000
csdc2 Danio rerio ENSDARG00000041323 N 0.000
carhsp1 Danio rerio ENSDARG00000053129 N 0.000
CSDC2 Danio rerio ENSDARG00000068477 N 0.000
CARHSP1 Dasypus novemcinctus ENSDNOG00000024912 N 0.000
Csdc2 Dipodomys ordii ENSDORG00000011754 N 0.000
LOC100051399 Equus caballus ENSECAG00000019386 N 0.000
LOC100070658 Equus caballus ENSECAG00000022234 N 0.000
CSDC2 Erinaceus europaeus ENSEEUG00000003639 N 0.000
CARHSP1 Echinops telfairi ENSETEG00000008180 N 0.000
CSDC2 Echinops telfairi ENSETEG00000019516 N 0.000
CARHSP1 Felis catus ENSFCAG00000003289 N 0.000
CSDC2 Felis catus ENSFCAG00000003677 N 0.000
CARHSP1 Homo sapiens ENSG00000153048 N 0.000
CSDC2 Homo sapiens ENSG00000172346 N 0.000
CSDC2 Gasterosteus aculeatus ENSGACG00000004665 N 0.000
CARHSP1 Gasterosteus aculeatus ENSGACG00000005857 N 0.000
CSDC2 Gasterosteus aculeatus ENSGACG00000007540 N 0.000
CSDC2 Gallus gallus ENSGALG00000000049 N 0.000
CARHSP1 Gallus gallus ENSGALG00000007313 N 0.000
CARHSP1 Loxodonta africana ENSLAFG00000022498 N 0.000
CSDC2 Loxodonta africana ENSLAFG00000027155 N 0.000
CSDC2 Macropus eugenii ENSMEUG00000002050 N 0.000
CARHSP1 Macropus eugenii ENSMEUG00000016403 N 0.000
ENSMGAG00000008554 Meleagris gallopavo ENSMGAG00000008554 N 0.000
CSDC2 Meleagris gallopavo ENSMGAG00000012131 N 0.000
CSDC2 Microcebus murinus ENSMICG00000005978 N 0.000
CARHSP1 Microcebus murinus ENSMICG00000006185 N 0.000
CSDC2 Myotis lucifugus ENSMLUG00000002495 N 0.000
CARHSP1 Myotis lucifugus ENSMLUG00000009734 N 0.000
CSDC2 Macaca mulatta ENSMMUG00000001852 N 0.000
CARHSP1 Macaca mulatta ENSMMUG00000021565 N 0.000
XM_001367025.1 Monodelphis domestica ENSMODG00000005721 N 0.000
XM_001363201.1 Monodelphis domestica ENSMODG00000024949 N 0.000
Carhsp1 Mus musculus ENSMUSG00000008393 N 0.000
Csdc2 Mus musculus ENSMUSG00000042109 N 0.000
CARHSP1 Ornithorhynchus anatinus ENSOANG00000008257 N 0.000
CSDC2 Oryctolagus cuniculus ENSOCUG00000006938 N 0.000
CSDC2 Otolemur garnettii ENSOGAG00000002852 N 0.000
CARHSP1 Otolemur garnettii ENSOGAG00000014708 N 0.000
CARHSP1 Ochotona princeps ENSOPRG00000010356 N 0.000
CSDC2 Ochotona princeps ENSOPRG00000010664 N 0.000
CSDC2 Oryzias latipes ENSORLG00000002636 N 0.000
CSDC2 Oryzias latipes ENSORLG00000014166 N 0.000
CARHSP1 Procavia capensis ENSPCAG00000002081 N 0.000
CSDC2 Procavia capensis ENSPCAG00000014857 N 0.000
ENSPPYG00000007085 Pongo pygmaeus ENSPPYG00000007085 N 0.000
ENSPPYG00000011873 Pongo pygmaeus ENSPPYG00000011873 N 0.000
CARHSP1 Pan troglodytes ENSPTRG00000007749 N 0.000
CSDC2 Pteropus vampyrus ENSPVAG00000001165 N 0.000
CARHSP1 Pteropus vampyrus ENSPVAG00000003125 N 0.000
Carhsp1 Rattus norvegicus ENSRNOG00000002610 N 0.000
Csdc2 Rattus norvegicus ENSRNOG00000005332 N 0.000
CSDC2 Sus scrofa ENSSSCG00000000062 N 0.000
CARHSP1 Sus scrofa ENSSSCG00000007911 N 0.000
CARHSP1 Spermophilus tridecemlineatus ENSSTOG00000007008 N 0.000
CARHSP1 Tupaia belangeri ENSTBEG00000005777 N 0.000
CSDC2 Tupaia belangeri ENSTBEG00000011596 N 0.000
CARHSP1 Taeniopygia guttata ENSTGUG00000004665 N 0.000
CSDC2 Taeniopygia guttata ENSTGUG00000009898 N 0.000
CSDC2 Tetraodon nigroviridis ENSTNIG00000004955 N 0.000
CARHSP1 Tetraodon nigroviridis ENSTNIG00000011153 N 0.000
CSDC2 Tetraodon nigroviridis ENSTNIG00000012937 N 0.000
CSDC2 Takifugu rubripes ENSTRUG00000004175 N 0.000
CARHSP1 Takifugu rubripes ENSTRUG00000010962 N 0.000
CSDC2 Takifugu rubripes ENSTRUG00000017020 N 0.000
CSDC2 Tursiops truncatus ENSTTRG00000006736 N 0.000
CARHSP1 Tursiops truncatus ENSTTRG00000014828 N 0.000