CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pm.C_20549
(
Thielavia terrestris
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
estExt_fgenesh2_pm.C_20549
T25799_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pm.C_20549
RRM
255
325
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVFSSHEEAAESLCMNGRALNEKAIE
estExt_fgenesh2_pm.C_20549
RanBP ZF
352
379
RPGDWTCPSCGFSNFQRRTACFRCSFPA
estExt_fgenesh2_pm.C_20549
RanBP ZF
427
458
RAGDWKCGNEVCGYHNFAKNVCCLRCGASRAG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Thielavia terrestris
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action