amel4_ncbi_hmm5234 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm5234 T31925_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.913
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm5234 RRM 121 195
amel4_ncbi_hmm5234 RRM 227 297
amel4_ncbi_hmm5234 RRM 357 418

Links

Other RRM family RBPs
Other Apis mellifera RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.735
AAEL002818 Aedes aegypti AAEL002818 I 0.928
AAH44032 Xenopus laevis AAH44032 I 0.803
AGAP002908 Anopheles gambiae AGAP002908 I 0.923
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.803
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.947
CBG15152 Caenorhabditis briggsae CBG15152 I 0.725
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.928
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.928
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.856
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.909
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.909
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.808
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.803
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.798
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.738
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.803
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.722
u2af2b Danio rerio ENSDARG00000011740 I 0.788
u2af2a Danio rerio ENSDARG00000012505 I 0.788
LOC100050729 Equus caballus ENSECAG00000010110 I 0.803
U2AF2 Homo sapiens ENSG00000063244 D 0.803
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.788
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.795
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.803
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.803
U2af2 Mus musculus ENSMUSG00000030435 I 0.803
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.793
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.803
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.803
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.788
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.786
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.788
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.817
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.803
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.803
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.784
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.841
U2af50 Drosophila melanogaster FBgn0005411 D 0.913
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.913
GF19596 Drosophila ananassae FBgn0096603 I 0.913
GG19328 Drosophila erecta FBgn0111532 I 0.913
GH12033 Drosophila grimshawi FBgn0119512 I 0.913
GI14308 Drosophila mojavensis FBgn0137061 I 0.913
GL15893 Drosophila persimilis FBgn0153497 I 0.913
GM13406 Drosophila sechellia FBgn0168337 I 0.913
GD24494 Drosophila simulans FBgn0195829 I 0.913
GJ19364 Drosophila virilis FBgn0206507 I 0.856
GK10063 Drosophila willistoni FBgn0212078 I 0.913
GE15975 Drosophila yakuba FBgn0233531 I 0.913
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.718
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.990
PHUM460480 Pediculus humanus PHUM460480 I 0.918
Smp_019690 Schistosoma mansoni Smp_019690 I 0.736
SNAP_00000255 Daphnia pulex SNAP_00000255 N 0.708