ENSCING00000003455 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000003455 T35378_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.767
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000007092 RRM 164 238
ENSCINP00000007092 RRM 274 344
ENSCINP00000007092 RRM 404 467
ENSCINP00000007109 RRM 132 206
ENSCINP00000007109 RRM 242 312
ENSCINP00000007109 RRM 375 438

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.000
AAEL002818 Aedes aegypti AAEL002818 I 0.743
AAH44032 Xenopus laevis AAH44032 I 0.771
AGAP002908 Anopheles gambiae AGAP002908 I 0.729
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.738
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.767
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.752
CBG15152 Caenorhabditis briggsae CBG15152 I 0.000
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.748
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.748
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.000
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.738
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.738
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.767
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.771
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.762
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.767
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.948
u2af2b Danio rerio ENSDARG00000011740 I 0.752
u2af2a Danio rerio ENSDARG00000012505 I 0.757
LOC100050729 Equus caballus ENSECAG00000010110 I 0.767
U2AF2 Homo sapiens ENSG00000063244 D 0.767
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.767
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.763
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.767
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.767
U2af2 Mus musculus ENSMUSG00000030435 I 0.767
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.767
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.767
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.767
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.767
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.739
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.771
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.757
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.767
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.771
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.743
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.771
U2af50 Drosophila melanogaster FBgn0005411 D 0.752
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.752
GF19596 Drosophila ananassae FBgn0096603 I 0.752
GG19328 Drosophila erecta FBgn0111532 I 0.752
GH12033 Drosophila grimshawi FBgn0119512 I 0.743
GI14308 Drosophila mojavensis FBgn0137061 I 0.743
GL15893 Drosophila persimilis FBgn0153497 I 0.752
GM13406 Drosophila sechellia FBgn0168337 I 0.752
GD24494 Drosophila simulans FBgn0195829 I 0.752
GJ19364 Drosophila virilis FBgn0206507 I 0.000
GK10063 Drosophila willistoni FBgn0212078 I 0.752
GE15975 Drosophila yakuba FBgn0233531 I 0.752
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.748
Smp_019690 Schistosoma mansoni Smp_019690 I 0.714