Pabpc5 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000001035 T36409_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.946
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000000972 RRM 20 90
ENSDORP00000000972 RRM 108 176
ENSDORP00000000972 RRM 201 270
ENSDORP00000000972 RRM 304 372

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_04373 Arthroderma benhamiae ARB_04373 N 0.000
ACLA_014960 Aspergillus clavatus CADACLAG00001282 N 0.000
AFUA_5G11930 Aspergillus fumigatus CADAFUAG00006332 N 0.000
An18g02460 Aspergillus niger CADANGAG00013880 N 0.000
ANIA_00109 Aspergillus nidulans CADANIAG00002640 N 0.000
AO090120000314 Aspergillus oryzae CADAORAG00011453 N 0.000
ATEG_02080 Aspergillus terreus CADATEAG00007708 N 0.000
NFIA_075370 Neosartorya fischeri CADNFIAG00007887 N 0.000
CHGG_04587 Chaetomium globosum CHGG_04587 I 0.000
CIMG_09202 Coccidioides immitis CIMG_09202 N 0.000
CPSG_03752 Coccidioides posadasii CPSG_03752 N 0.000
estExt_Genewise1Plus.C_11381 Myceliophthora thermophila estExt_Genewise1Plus.C_11381 I 0.000
estExt_Genewise1Plus.C_11424 Thielavia terrestris estExt_Genewise1Plus.C_11424 I 0.000
e_gw1.00129.522.1 Aspergillus carbonarius e_gw1.00129.522.1 N 0.000
HCAG_02639 Histoplasma capsulatum HCAG_02639 N 0.000
MCYG_05162 Microsporum canis MCYG_05162 N 0.000
MGYG_06202 Microsporum gypseum MGYG_06202 N 0.000
NCU08034 Neurospora crassa NCU08034 D 0.000
PABG_04932 Paracoccidioides brasiliensis PABG_04932 N 0.000
Pa_6_2170 Podospora anserina Pa_6_2170 I 0.000
Pc21g07040 Penicillium chrysogenum Pc21g07040 N 0.000
PMAA_031140 Penicillium marneffei PMAA_031140 N 0.000
scaffold_15-snap.81.1 Neurospora tetrasperma scaffold_15-snap.81.1 I 0.000
TEQG_04632 Trichophyton equinum TEQG_04632 N 0.000
TERG_06343 Trichophyton rubrum TERG_06343 N 0.000
TESG_03846 Trichophyton tonsurans TESG_03846 N 0.000
TRV_03163 Trichophyton verrucosum TRV_03163 N 0.000
UREG_05248 Uncinocarpus reesii UREG_05248 N 0.000