CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
RBM39
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000001557
T39041_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000001901
RRM
155
223
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSMODP00000001901
RRM
252
322
LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK
ENSMODP00000001901
RRM
446
505
DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
72073
Helobdella robusta
72073
N
0.000
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.000
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.000
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.000
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.000
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.000
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.000
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.000
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.000
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.000
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.000
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.000
CHGG_07887
Chaetomium globosum
CHGG_07887
N
0.000
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.000
CLUG_02796
Candida lusitaniae
CLUG_02796
N
0.000
CNBG_3113
Cryptococcus neoformans
CNBG_3113
N
0.000
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.000
CTRG_02162
Candida tropicalis
CTRG_02162
N
0.000
DEHA0A09449g
Debaryomyces hansenii
DEHA0A09449g
N
0.000
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.000
zc3h15
Danio rerio
ENSDARG00000015889
N
0.000
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.000
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.000
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.000
estExt_fgenesh1_pg.C_40101
Trichoderma atroviride
estExt_fgenesh1_pg.C_40101
N
0.000
estExt_fgenesh1_pg.C_70448
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70448
N
0.000
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.000
estExt_fgenesh1_pm.C_chr_90145
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_90145
N
0.000
estExt_fgenesh2_kg.C_60126
Thielavia terrestris
estExt_fgenesh2_kg.C_60126
N
0.000
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.000
estExt_Genewise1.C_210247
Trichoderma reesei
estExt_Genewise1.C_210247
N
0.000
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.000
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.000
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.000
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.000
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
Nectria haematococca
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
N
0.000
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.000
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.000
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.000
GD10149
Drosophila simulans
FBgn0181924
N
0.000
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.000
gw1.23.236.1
Trichoderma virens
gw1.23.236.1
N
0.000
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.000
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.000
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.000
MCYG_02954
Microsporum canis
MCYG_02954
N
0.000
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.000
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.000
Minc08580
Meloidogyne incognita
Minc08580
N
0.000
NCU01795
Neurospora crassa
NCU01795
N
0.000
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.000
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.000
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.000
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.000
PGUG_02031
Candida guilliermondii
PGUG_02031
N
0.000
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.000
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.000
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.000
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.000
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.000
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.000
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.000
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.000
VDAG_08863
Verticillium dahliae
VDAG_08863
N
0.000
VDBG_05241
Verticillium albo atrum
VDBG_05241
N
0.000