Elavl3 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000013752 T41092_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.906
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.906
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.906
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.896
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.896
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.896
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.749
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.749
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.749
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.749
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.749
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.749
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000018416 RRM 41 111
ENSRNOP00000018416 RRM 127 195
ENSRNOP00000018416 RRM 286 356

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96943 Xenopus laevis AAA96943 I 0.892
AAA96944 Xenopus laevis AAA96944 I 0.948
AAA96945 Xenopus laevis AAA96945 I 0.901
AAH94189 Xenopus laevis AAH94189 I 0.892
AAH99348 Xenopus laevis AAH99348 I 0.901
AAI69769 Xenopus laevis AAI69769 I 0.948
AAI70539 Xenopus laevis AAI70539 I 0.892
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.887
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.991
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.897
CAA59430 Xenopus laevis CAA59430 I 0.887
CBF67567 Xenopus laevis CBF67567 I 0.901
CBU92440 Xenopus laevis CBU92440 I 0.901
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.897
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.948
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.892
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.991
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.897
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.887
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.897
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.991
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.897
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.887
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.897
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.897
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.887
elavl3 Danio rerio ENSDARG00000014420 I 0.957
elavl2 Danio rerio ENSDARG00000040732 I 0.869
elavl4 Danio rerio ENSDARG00000045639 I 0.893
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.897
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.972
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.887
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.897
ELAVL2 Equus caballus ENSECAG00000020142 I 0.887
LOC100056901 Equus caballus ENSECAG00000020594 I 0.905
LOC100051268 Equus caballus ENSECAG00000022284 I 0.897
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.897
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.887
ELAVL2 Homo sapiens ENSG00000107105 D 0.887
ELAVL4 Homo sapiens ENSG00000162374 D 0.897
ELAVL3 Homo sapiens ENSG00000196361 I 0.991
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.897
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.957
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.873
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.897
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.878
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.897
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.887
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.991
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.897
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.991
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.887
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.758
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.897
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.953
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.897
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.897
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.897
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.883
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.887
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.897
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.897
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.892
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.924
Elavl3 Mus musculus ENSMUSG00000003410 I 1.000
Elavl2 Mus musculus ENSMUSG00000008489 I 0.887
Elavl4 Mus musculus ENSMUSG00000028546 I 0.897
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.806
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.887
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.897
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.991
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.897
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.887
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.897
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.882
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.948
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.897
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.897
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.844
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.897
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.887
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.897
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.962
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.887
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.000
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.887
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.991
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.887
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.897
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.887
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.897
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.887
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.991
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.763
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.706
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.869
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.897
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.873
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.892
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.944
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.892
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.877
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.957
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.897
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.877
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.991
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.000
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.883
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.887
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.897
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.901
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.944
Q91584 Xenopus laevis Q91584 I 0.948
Q91903 Xenopus laevis Q91903 I 0.892