ENSRNOG00000033356 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000033356 T41224_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.778
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.752
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000047908 RRM 1 65
ENSRNOP00000047908 RRM 76 146
ENSRNOP00000047908 RRM 168 229

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70529 Xenopus laevis AAH70529 I 0.702
AAI61702 Xenopus laevis AAI61702 I 0.721
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.797
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.787
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.797
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.782
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.786
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.797
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.737
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.797
syncrip Danio rerio ENSDARG00000040184 I 0.707
HNRNPR Equus caballus ENSECAG00000013733 I 0.797
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.752
HNRNPR Homo sapiens ENSG00000125944 I 0.797
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.707
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.773
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.797
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.797
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.773
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.752
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.797
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.792
Syncrip Mus musculus ENSMUSG00000032423 I 0.702
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.797
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.778
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.782
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.776
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.702
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.797
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.786
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.786
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.702
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.797
HNRNPR Sorex araneus ENSSARG00000001732 I 0.786
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.786
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.773
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.714
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.731