AAI61702 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAI61702 T59639_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.985
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.900
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.875
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI61702 RRM 66 134
AAI61702 RRM 147 214
AAI61702 RRM 242 304

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.985
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.910
HNRNPR Homo sapiens ENSG00000125944 I 0.910
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.910
HNRNPR Equus caballus ENSECAG00000013733 I 0.910
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.910
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.910
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.910
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.910
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.910
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.910
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.910
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.910
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.910
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.910
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.905
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.902
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.902
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.900
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.900
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.900
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.897
HNRNPR Sorex araneus ENSSARG00000001732 I 0.897
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.897
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.897
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.897
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.882
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.881
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.881
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.881
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.881
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.881
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.881
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.881
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.881
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.881
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.881
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.881
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.881
SYNCRIP Homo sapiens ENSG00000135316 I 0.881
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.881
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.881
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.881
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.881
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.881
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.881
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.881
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.881
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.881
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.876
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.876
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.876
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.876
Syncrip Mus musculus ENSMUSG00000032423 I 0.876
AAH70529 Xenopus laevis AAH70529 I 0.876
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.872
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.871
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.866
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.862
syncrip Danio rerio ENSDARG00000040184 I 0.861
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.856
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.851
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.851
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.851
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.851
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.847
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.842
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.842
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.842
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.842
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.842
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.838
syncripl Danio rerio ENSDARG00000026723 I 0.837
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.828
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.807
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.794
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.756
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.756
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.745
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.745
LOC100070472 Equus caballus ENSECAG00000012464 I 0.731
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.725
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.721