HNRNPR (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000003202 T37407_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.871
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.865
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.820
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000004209 RRM 167 235
ENSGACP00000004209 RRM 248 315
ENSGACP00000004209 RRM 343 405

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.960
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.955
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.951
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.866
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.866
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.861
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.861
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.861
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.856
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.856
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.856
HNRNPR Equus caballus ENSECAG00000013733 I 0.856
HNRNPR Homo sapiens ENSG00000125944 I 0.856
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.856
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.856
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.856
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.856
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.856
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.856
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.856
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.856
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.856
AAI61702 Xenopus laevis AAI61702 I 0.851
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.849
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.849
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.844
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.844
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.844
HNRNPR Sorex araneus ENSSARG00000001732 I 0.844
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.844
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.841
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.835
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.830
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.830
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.830
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.830
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.830
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.830
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.830
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.830
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.830
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.830
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.830
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.830
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.830
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.830
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.830
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.830
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.830
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.830
Syncrip Mus musculus ENSMUSG00000032423 I 0.830
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.830
SYNCRIP Homo sapiens ENSG00000135316 I 0.830
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.830
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.830
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.830
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.830
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.829
syncrip Danio rerio ENSDARG00000040184 I 0.825
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.825
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.825
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.824
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.822
syncripl Danio rerio ENSDARG00000026723 I 0.822
AAH70529 Xenopus laevis AAH70529 I 0.820
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.820
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.820
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.815
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.812
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.812
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.809
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.807
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.802
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.780
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.756
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.746
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.741
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.731
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.707