ENSCPOG00000009653 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000009653 T35818_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.975
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.920
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000008665 RRM 167 235
ENSCPOP00000008665 RRM 248 315
ENSCPOP00000008665 RRM 343 405

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPR Loxodonta africana ENSLAFG00000012793 I 1.000
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 1.000
HNRNPR Homo sapiens ENSG00000125944 I 1.000
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 1.000
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 1.000
Hnrnpr Mus musculus ENSMUSG00000066037 I 1.000
HNRNPR Macaca mulatta ENSMMUG00000010970 I 1.000
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 1.000
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 1.000
HNRNPR Equus caballus ENSECAG00000013733 I 1.000
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 1.000
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.995
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.990
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.985
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.985
HNRNPR Sorex araneus ENSSARG00000001732 I 0.985
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.985
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.985
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.980
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.980
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.980
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.975
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.975
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.975
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.970
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.951
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.936
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.920
AAI61702 Xenopus laevis AAI61702 I 0.910
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.906
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.882
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.856
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.853
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.851
AAH70529 Xenopus laevis AAH70529 I 0.851
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.851
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.851
Syncrip Mus musculus ENSMUSG00000032423 I 0.851
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.847
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.847
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.847
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.847
SYNCRIP Homo sapiens ENSG00000135316 I 0.847
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.847
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.847
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.847
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.847
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.847
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.847
syncrip Danio rerio ENSDARG00000040184 I 0.847
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.847
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.847
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.847
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.847
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.847
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.847
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.847
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.847
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.847
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.847
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.847
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.847
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.847
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.842
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.842
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.842
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.839
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.837
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.837
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.837
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.830
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.830
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.828
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.828
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.823
syncripl Danio rerio ENSDARG00000026723 I 0.818
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.818
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.818
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.797
HNRNPR Felis catus ENSFCAG00000019123 I 0.734
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.725
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.725
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.705
LOC100070472 Equus caballus ENSECAG00000012464 I 0.703