TRA2B (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000006720 T41599_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000006011 RRM 120 182

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44695 Xenopus laevis AAH44695 N 0.775
AAH72952 Xenopus laevis AAH72952 N 0.775
AAI08874 Xenopus laevis AAI08874 N 0.775
AGAP008136 Anopheles gambiae AGAP008136 N 0.000
AMAG_00661 Allomyces macrogynus AMAG_00661 N 0.000
AMAG_02172 Allomyces macrogynus AMAG_02172 N 0.000
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.000
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.000
Ame_R003489 Ailuropoda melanoleuca Ame_R003489 N 0.817
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.000
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.000
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.000
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.000
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.000
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.000
An12g00490 Aspergillus niger CADANGAG00009498 N 0.000
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.000
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.000
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.000
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.000
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.000
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.000
TRA2B Anolis carolinensis ENSACAG00000008084 N 0.817
TRA2B_BOVIN Bos taurus ENSBTAG00000001697 N 0.817
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.000
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.000
TRA2B Canis familiaris ENSCAFG00000013345 N 0.817
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.000
LOC100398526 Callithrix jacchus ENSCJAG00000014710 N 0.817
TRA2B Cavia porcellus ENSCPOG00000006313 N 0.817
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.000
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.000
tra2b Danio rerio ENSDARG00000002168 N 0.732
ppil4 Danio rerio ENSDARG00000043854 N 0.000
ENSDNOG00000011679 Dasypus novemcinctus ENSDNOG00000011679 N 0.817
ENSDNOG00000018192 Dasypus novemcinctus ENSDNOG00000018192 N 0.800
ENSDORG00000004468 Dipodomys ordii ENSDORG00000004468 N 0.857
LOC100067887 Equus caballus ENSECAG00000012701 N 0.817
PPIL4 Equus caballus ENSECAG00000021819 N 0.000
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.000
TRA2B Erinaceus europaeus ENSEEUG00000009822 N 0.817
TRA2B Felis catus ENSFCAG00000010526 N 0.817
PPIL4 Homo sapiens ENSG00000131013 N 0.000
TRA2B Homo sapiens ENSG00000136527 D 0.817
TRA2B Gasterosteus aculeatus ENSGACG00000005986 N 0.732
ENSGACG00000010109 Gasterosteus aculeatus ENSGACG00000010109 N 0.718
Q9DDU8_CHICK Gallus gallus ENSGALG00000006531 N 0.803
PPIL4 Gallus gallus ENSGALG00000012364 N 0.000
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.000
TRA2B Gorilla gorilla ENSGGOG00000009844 N 0.817
TRA2B Loxodonta africana ENSLAFG00000017165 N 0.817
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.000
TRA2B Macropus eugenii ENSMEUG00000013768 N 0.857
ENSMGAG00000002853 Meleagris gallopavo ENSMGAG00000002853 N 0.803
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.000
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.000
TRA2B Microcebus murinus ENSMICG00000010611 N 0.817
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.000
ENSMLUG00000005781 Myotis lucifugus ENSMLUG00000005781 N 0.857
TRA2B Myotis lucifugus ENSMLUG00000008670 N 0.704
Q8WMQ0_MACMU Macaca mulatta ENSMMUG00000001185 N 0.817
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.000
ENSMODG00000009767 Monodelphis domestica ENSMODG00000009767 N 0.761
TRA2B Monodelphis domestica ENSMODG00000013248 N 0.817
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.000
Ppil4 Mus musculus ENSMUSG00000015757 N 0.000
Tra2b Mus musculus ENSMUSG00000022858 N 0.817
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.000
TRA2B Ornithorhynchus anatinus ENSOANG00000013953 N 0.817
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.000
TRA2B Oryctolagus cuniculus ENSOCUG00000008940 N 0.817
TRA2B Otolemur garnettii ENSOGAG00000005386 N 0.857
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.000
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.000
TRA2B Ochotona princeps ENSOPRG00000007990 N 0.817
Q6I6X8_ORYLA Oryzias latipes ENSORLG00000013780 N 0.704
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.000
Q6I6X6_ORYLA Oryzias latipes ENSORLG00000016554 N 0.732
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.000
ENSPPYG00000014374 Pongo pygmaeus ENSPPYG00000014374 N 0.817
TRA2B Pan troglodytes ENSPTRG00000015707 N 0.817
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.000
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.000
TRA2B Pteropus vampyrus ENSPVAG00000008615 N 0.817
Tra2b Rattus norvegicus ENSRNOG00000001783 N 0.817
D3ZLN0_RAT Rattus norvegicus ENSRNOG00000002201 N 0.775
Tra2b Rattus norvegicus ENSRNOG00000005867 N 0.704
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.000
TRA2B Sorex araneus ENSSARG00000007638 N 0.817
PPIL4 Sorex araneus ENSSARG00000011244 N 0.000
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.000
TRA2B Tupaia belangeri ENSTBEG00000015927 N 0.718
SFRS10 Taeniopygia guttata ENSTGUG00000006742 N 0.803
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.000
SFRS10 Taeniopygia guttata ENSTGUG00000017023 N 0.803
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.000
ENSTNIG00000017210 Tetraodon nigroviridis ENSTNIG00000017210 N 0.732
ENSTRUG00000015168 Takifugu rubripes ENSTRUG00000015168 N 0.718
TRA2B Tarsius syrichta ENSTSYG00000000652 N 0.817
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.000
TRA2B Tursiops truncatus ENSTTRG00000008243 N 0.817
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.000
TRA2B Vicugna pacos ENSVPAG00000012015 N 0.817
tra2b Xenopus tropicalis ENSXETG00000007511 N 0.789
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.000
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.000
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.000
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.000
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.000
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.000
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.000
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.000
GF18772 Drosophila ananassae FBgn0095789 N 0.000
GH18460 Drosophila grimshawi FBgn0125927 N 0.000
GI24038 Drosophila mojavensis FBgn0146761 N 0.000
GL13859 Drosophila persimilis FBgn0151464 N 0.000
GJ23668 Drosophila virilis FBgn0210765 N 0.000
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.000
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.000
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.000
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.000
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.000
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.000
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.000
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.000
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.000
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.000
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.000
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.000
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.000
LOAG_08216 Loa loa LOAG_08216 N 0.000
Minc10084 Meloidogyne incognita Minc10084 N 0.000
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.000
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.000
PHUM268300 Pediculus humanus PHUM268300 N 0.000
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.000
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.000
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.000
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.000
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.000
Smp_165540 Schistosoma mansoni Smp_165540 N 0.000
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.000
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.000
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.000
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.000
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.000
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.000
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.000
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.000
YALI0E31551g Yarrowia lipolytica YALI0E31551g N 0.000