tra2b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000002168 T36031_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000016139 RRM 125 195

Links

Other RRM family RBPs
Other Danio rerio RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000010109 Gasterosteus aculeatus ENSGACG00000010109 N 0.958
ENSTNIG00000017210 Tetraodon nigroviridis ENSTNIG00000017210 N 0.944
Q6I6X8_ORYLA Oryzias latipes ENSORLG00000013780 N 0.944
SFRS10 Taeniopygia guttata ENSTGUG00000017023 N 0.930
ENSMGAG00000002853 Meleagris gallopavo ENSMGAG00000002853 N 0.930
ENSTRUG00000015168 Takifugu rubripes ENSTRUG00000015168 N 0.930
SFRS10 Taeniopygia guttata ENSTGUG00000006742 N 0.930
Q9DDU8_CHICK Gallus gallus ENSGALG00000006531 N 0.930
AAH72952 Xenopus laevis AAH72952 N 0.930
TRA2B Pteropus vampyrus ENSPVAG00000008615 N 0.915
TRA2B Canis familiaris ENSCAFG00000013345 N 0.915
Tra2b Rattus norvegicus ENSRNOG00000001783 N 0.915
TRA2B Pan troglodytes ENSPTRG00000015707 N 0.915
LOC100398526 Callithrix jacchus ENSCJAG00000014710 N 0.915
Tra2b Mus musculus ENSMUSG00000022858 N 0.915
TRA2B Ornithorhynchus anatinus ENSOANG00000013953 N 0.915
TRA2B Oryctolagus cuniculus ENSOCUG00000008940 N 0.915
TRA2B Ochotona princeps ENSOPRG00000007990 N 0.915
TRA2B Sorex araneus ENSSARG00000007638 N 0.915
TRA2B Anolis carolinensis ENSACAG00000008084 N 0.915
TRA2B Tursiops truncatus ENSTTRG00000008243 N 0.915
TRA2B Vicugna pacos ENSVPAG00000012015 N 0.915
tra2b Xenopus tropicalis ENSXETG00000007511 N 0.915
Ame_R003489 Ailuropoda melanoleuca Ame_R003489 N 0.915
TRA2B Tarsius syrichta ENSTSYG00000000652 N 0.915
TRA2B Monodelphis domestica ENSMODG00000013248 N 0.915
AAH44695 Xenopus laevis AAH44695 N 0.915
AAI08874 Xenopus laevis AAI08874 N 0.915
TRA2B Cavia porcellus ENSCPOG00000006313 N 0.915
TRA2B_BOVIN Bos taurus ENSBTAG00000001697 N 0.915
ENSPPYG00000014374 Pongo pygmaeus ENSPPYG00000014374 N 0.915
Q8WMQ0_MACMU Macaca mulatta ENSMMUG00000001185 N 0.915
TRA2B Homo sapiens ENSG00000136527 D 0.915
TRA2B Gorilla gorilla ENSGGOG00000009844 N 0.915
LOC100067887 Equus caballus ENSECAG00000012701 N 0.915
TRA2B Erinaceus europaeus ENSEEUG00000009822 N 0.915
TRA2B Loxodonta africana ENSLAFG00000017165 N 0.915
TRA2B Microcebus murinus ENSMICG00000010611 N 0.915
TRA2B Felis catus ENSFCAG00000010526 N 0.915
ENSDNOG00000011679 Dasypus novemcinctus ENSDNOG00000011679 N 0.901
Q6I6X6_ORYLA Oryzias latipes ENSORLG00000016554 N 0.887
TRA2B Gasterosteus aculeatus ENSGACG00000005986 N 0.887
ENSMODG00000009767 Monodelphis domestica ENSMODG00000009767 N 0.859
TRA2B Tupaia belangeri ENSTBEG00000015927 N 0.859
D3ZLN0_RAT Rattus norvegicus ENSRNOG00000002201 N 0.859
TRA2A Tupaia belangeri ENSTBEG00000013773 N 0.845
TRA2A Canis familiaris ENSCAFG00000002788 N 0.845
TRA2A Echinops telfairi ENSETEG00000007250 N 0.845
Tra2a Dipodomys ordii ENSDORG00000009361 N 0.845
TRA2A Loxodonta africana ENSLAFG00000006598 N 0.845
TRA2A Sus scrofa ENSSSCG00000015387 N 0.845
Q2KJ71_BOVIN Bos taurus ENSBTAG00000012622 N 0.845
TRA2A Gorilla gorilla ENSGGOG00000009053 N 0.845
TRA2A Homo sapiens ENSG00000164548 N 0.845
Ame_R009558 Ailuropoda melanoleuca Ame_R009558 N 0.845
LOC100068009 Equus caballus ENSECAG00000011508 N 0.845
TRA2A Choloepus hoffmanni ENSCHOG00000001130 N 0.845
TRA2A Oryctolagus cuniculus ENSOCUG00000024139 N 0.845
TRA2A Otolemur garnettii ENSOGAG00000009733 N 0.845
TRA2A Ochotona princeps ENSOPRG00000007606 N 0.845
TRA2A Ornithorhynchus anatinus ENSOANG00000014202 N 0.845
Q8WMQ1_MACMU Macaca mulatta ENSMMUG00000006286 N 0.845
TRA2A Cavia porcellus ENSCPOG00000010739 N 0.845
TRA2A Monodelphis domestica ENSMODG00000000807 N 0.845
Tra2a Mus musculus ENSMUSG00000029817 N 0.845
Tra2a Rattus norvegicus ENSRNOG00000009156 N 0.845
TRA2A Myotis lucifugus ENSMLUG00000013972 N 0.845
TRA2A Callithrix jacchus ENSCJAG00000001509 N 0.845
TRA2A Pteropus vampyrus ENSPVAG00000011298 N 0.845
TRA2A Macropus eugenii ENSMEUG00000001202 N 0.845
TRA2A Erinaceus europaeus ENSEEUG00000015674 N 0.845
TRA2A Pan troglodytes ENSPTRG00000018988 N 0.845
ENSPPYG00000017728 Pongo pygmaeus ENSPPYG00000017728 N 0.845
TRA2A Procavia capensis ENSPCAG00000004148 N 0.845
TRA2B Myotis lucifugus ENSMLUG00000008670 N 0.845
TRA2A Tursiops truncatus ENSTTRG00000008922 N 0.831
TRA2A Anolis carolinensis ENSACAG00000013502 N 0.831
TRA2A Taeniopygia guttata ENSTGUG00000002795 N 0.817
TRA2A Gasterosteus aculeatus ENSGACG00000006878 N 0.817
TRA2A Meleagris gallopavo ENSMGAG00000010514 N 0.817
tra2a Xenopus tropicalis ENSXETG00000007397 N 0.817
Q5ZLY6_CHICK Gallus gallus ENSGALG00000010973 N 0.817
tra2a Danio rerio ENSDARG00000007863 N 0.803
ENSDNOG00000018192 Dasypus novemcinctus ENSDNOG00000018192 N 0.803
Tra2b Rattus norvegicus ENSRNOG00000005867 N 0.789
TRA2A Spermophilus tridecemlineatus ENSSTOG00000012073 N 0.789
AAH73641 Xenopus laevis AAH73641 N 0.775
AAH44990 Xenopus laevis AAH44990 N 0.775
ISCW010309 Ixodes scapularis ISCW010309 N 0.775
ENSMODG00000015264 Monodelphis domestica ENSMODG00000015264 N 0.746
TRA2B Spermophilus tridecemlineatus ENSSTOG00000006720 N 0.732
e_gw.35.152.1 Nematostella vectensis e_gw.35.152.1 N 0.704