CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMODG00000009767
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000009767
T39123_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000012202
RRM
94
164
LGVFGLSLYTTERDLRELFSKYGPIADVSIVYDQQSRLSRGFAFVYFKNVADAKEAKERANGMKLDGRRIR
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tra2b
Rattus norvegicus
ENSRNOG00000001783
N
0.930
TRA2B
Canis familiaris
ENSCAFG00000013345
N
0.930
LOC100398526
Callithrix jacchus
ENSCJAG00000014710
N
0.930
TRA2B
Pteropus vampyrus
ENSPVAG00000008615
N
0.930
TRA2B
Pan troglodytes
ENSPTRG00000015707
N
0.930
TRA2B
Cavia porcellus
ENSCPOG00000006313
N
0.930
TRA2B_BOVIN
Bos taurus
ENSBTAG00000001697
N
0.930
TRA2B
Anolis carolinensis
ENSACAG00000008084
N
0.930
TRA2B
Vicugna pacos
ENSVPAG00000012015
N
0.930
TRA2B
Tursiops truncatus
ENSTTRG00000008243
N
0.930
SFRS10
Taeniopygia guttata
ENSTGUG00000017023
N
0.930
Ame_R003489
Ailuropoda melanoleuca
Ame_R003489
N
0.930
TRA2B
Sorex araneus
ENSSARG00000007638
N
0.930
TRA2B
Monodelphis domestica
ENSMODG00000013248
N
0.930
TRA2B
Tarsius syrichta
ENSTSYG00000000652
N
0.930
ENSPPYG00000014374
Pongo pygmaeus
ENSPPYG00000014374
N
0.930
ENSMGAG00000002853
Meleagris gallopavo
ENSMGAG00000002853
N
0.930
TRA2B
Oryctolagus cuniculus
ENSOCUG00000008940
N
0.930
TRA2B
Ornithorhynchus anatinus
ENSOANG00000013953
N
0.930
TRA2B
Microcebus murinus
ENSMICG00000010611
N
0.930
Q8WMQ0_MACMU
Macaca mulatta
ENSMMUG00000001185
N
0.930
Tra2b
Mus musculus
ENSMUSG00000022858
N
0.930
TRA2B
Loxodonta africana
ENSLAFG00000017165
N
0.930
TRA2B
Gorilla gorilla
ENSGGOG00000009844
N
0.930
TRA2B
Erinaceus europaeus
ENSEEUG00000009822
N
0.930
LOC100067887
Equus caballus
ENSECAG00000012701
N
0.930
TRA2B
Felis catus
ENSFCAG00000010526
N
0.930
TRA2B
Ochotona princeps
ENSOPRG00000007990
N
0.930
Q9DDU8_CHICK
Gallus gallus
ENSGALG00000006531
N
0.930
TRA2B
Homo sapiens
ENSG00000136527
D
0.930
SFRS10
Taeniopygia guttata
ENSTGUG00000006742
N
0.930
ENSDNOG00000011679
Dasypus novemcinctus
ENSDNOG00000011679
N
0.915
tra2b
Xenopus tropicalis
ENSXETG00000007511
N
0.901
AAH72952
Xenopus laevis
AAH72952
N
0.887
D3ZLN0_RAT
Rattus norvegicus
ENSRNOG00000002201
N
0.887
AAH44695
Xenopus laevis
AAH44695
N
0.873
AAI08874
Xenopus laevis
AAI08874
N
0.873
tra2b
Danio rerio
ENSDARG00000002168
N
0.859
Q6I6X6_ORYLA
Oryzias latipes
ENSORLG00000016554
N
0.859
TRA2B
Tupaia belangeri
ENSTBEG00000015927
N
0.859
ENSTNIG00000017210
Tetraodon nigroviridis
ENSTNIG00000017210
N
0.859
TRA2B
Gasterosteus aculeatus
ENSGACG00000005986
N
0.859
ENSTRUG00000015168
Takifugu rubripes
ENSTRUG00000015168
N
0.845
ENSGACG00000010109
Gasterosteus aculeatus
ENSGACG00000010109
N
0.845
TRA2B
Myotis lucifugus
ENSMLUG00000008670
N
0.831
Q6I6X8_ORYLA
Oryzias latipes
ENSORLG00000013780
N
0.831
ENSDNOG00000018192
Dasypus novemcinctus
ENSDNOG00000018192
N
0.817
Tra2b
Rattus norvegicus
ENSRNOG00000005867
N
0.789
tra2a
Danio rerio
ENSDARG00000007863
N
0.761
TRA2B
Spermophilus tridecemlineatus
ENSSTOG00000006720
N
0.761
TRA2A
Ochotona princeps
ENSOPRG00000007606
N
0.746
TRA2A
Gasterosteus aculeatus
ENSGACG00000006878
N
0.746
TRA2A
Homo sapiens
ENSG00000164548
N
0.746
TRA2A
Monodelphis domestica
ENSMODG00000000807
N
0.746
TRA2A
Tupaia belangeri
ENSTBEG00000013773
N
0.746
TRA2A
Echinops telfairi
ENSETEG00000007250
N
0.746
TRA2A
Otolemur garnettii
ENSOGAG00000009733
N
0.746
TRA2A
Gorilla gorilla
ENSGGOG00000009053
N
0.746
TRA2A
Ornithorhynchus anatinus
ENSOANG00000014202
N
0.746
Tra2a
Mus musculus
ENSMUSG00000029817
N
0.746
TRA2A
Myotis lucifugus
ENSMLUG00000013972
N
0.746
TRA2A
Macropus eugenii
ENSMEUG00000001202
N
0.746
TRA2A
Loxodonta africana
ENSLAFG00000006598
N
0.746
TRA2A
Oryctolagus cuniculus
ENSOCUG00000024139
N
0.746
TRA2A
Procavia capensis
ENSPCAG00000004148
N
0.746
TRA2A
Erinaceus europaeus
ENSEEUG00000015674
N
0.746
TRA2A
Callithrix jacchus
ENSCJAG00000001509
N
0.746
TRA2A
Pteropus vampyrus
ENSPVAG00000011298
N
0.746
TRA2A
Pan troglodytes
ENSPTRG00000018988
N
0.746
TRA2A
Choloepus hoffmanni
ENSCHOG00000001130
N
0.746
Tra2a
Rattus norvegicus
ENSRNOG00000009156
N
0.746
Q2KJ71_BOVIN
Bos taurus
ENSBTAG00000012622
N
0.746
TRA2A
Canis familiaris
ENSCAFG00000002788
N
0.746
LOC100068009
Equus caballus
ENSECAG00000011508
N
0.746
TRA2A
Cavia porcellus
ENSCPOG00000010739
N
0.746
Q8WMQ1_MACMU
Macaca mulatta
ENSMMUG00000006286
N
0.746
Tra2a
Dipodomys ordii
ENSDORG00000009361
N
0.746
ENSPPYG00000017728
Pongo pygmaeus
ENSPPYG00000017728
N
0.746
Ame_R009558
Ailuropoda melanoleuca
Ame_R009558
N
0.746
TRA2A
Sus scrofa
ENSSSCG00000015387
N
0.746
TRA2A
Meleagris gallopavo
ENSMGAG00000010514
N
0.732
TRA2A
Anolis carolinensis
ENSACAG00000013502
N
0.732
Q5ZLY6_CHICK
Gallus gallus
ENSGALG00000010973
N
0.732
TRA2A
Tursiops truncatus
ENSTTRG00000008922
N
0.732
ENSMODG00000015264
Monodelphis domestica
ENSMODG00000015264
N
0.732
TRA2A
Taeniopygia guttata
ENSTGUG00000002795
N
0.732
ENSDORG00000004468
Dipodomys ordii
ENSDORG00000004468
N
0.718
ISCW010309
Ixodes scapularis
ISCW010309
N
0.718
ENSMLUG00000005781
Myotis lucifugus
ENSMLUG00000005781
N
0.718
TRA2B
Otolemur garnettii
ENSOGAG00000005386
N
0.718
TRA2B
Macropus eugenii
ENSMEUG00000013768
N
0.718
tra2a
Xenopus tropicalis
ENSXETG00000007397
N
0.704