ENSTRUG00000006885 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000006885 T42254_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.885
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000016891 RRM 145 219
ENSTRUP00000016891 RRM 256 326
ENSTRUP00000016891 RRM 388 449
ENSTRUP00000016892 RRM 138 212
ENSTRUP00000016892 RRM 249 319
ENSTRUP00000016892 RRM 385 446

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.763
AAEL002818 Aedes aegypti AAEL002818 I 0.808
AAH44032 Xenopus laevis AAH44032 I 0.885
AGAP002908 Anopheles gambiae AGAP002908 I 0.803
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.885
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.808
CBG15152 Caenorhabditis briggsae CBG15152 I 0.706
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.812
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.812
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.750
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.798
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.798
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.885
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.885
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.880
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.757
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.885
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.746
u2af2b Danio rerio ENSDARG00000011740 I 0.865
u2af2a Danio rerio ENSDARG00000012505 I 0.875
LOC100050729 Equus caballus ENSECAG00000010110 I 0.885
U2AF2 Homo sapiens ENSG00000063244 D 0.885
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.875
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.971
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.885
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.885
U2af2 Mus musculus ENSMUSG00000030435 I 0.885
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.880
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.880
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.885
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.875
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.957
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.875
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.885
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.885
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.788
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.822
U2af50 Drosophila melanogaster FBgn0005411 D 0.803
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.803
GF19596 Drosophila ananassae FBgn0096603 I 0.803
GG19328 Drosophila erecta FBgn0111532 I 0.803
GH12033 Drosophila grimshawi FBgn0119512 I 0.793
GI14308 Drosophila mojavensis FBgn0137061 I 0.793
GL15893 Drosophila persimilis FBgn0153497 I 0.803
GM13406 Drosophila sechellia FBgn0168337 I 0.803
GD24494 Drosophila simulans FBgn0195829 I 0.803
GJ19364 Drosophila virilis FBgn0206507 I 0.740
GK10063 Drosophila willistoni FBgn0212078 I 0.803
GE15975 Drosophila yakuba FBgn0233531 I 0.803
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.742
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.822
PHUM460480 Pediculus humanus PHUM460480 I 0.784
Smp_019690 Schistosoma mansoni Smp_019690 I 0.745
SNAP_00000255 Daphnia pulex SNAP_00000255 N 0.000