CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GJ24240
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0211322
T44133_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0238657
RRM
50
116
AFVGNLPKGLVQGDVMKIFDDFEVKSVRLIKDRETDEFKGYGYVEFTTLEQLKRALSRNGRIKLDNL
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.000
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.000
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.000
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.000
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.000
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.000