76581 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 76581 T48867_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.718
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
76581 RRM 98 168

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2VDB3 Xenopus laevis A2VDB3 I 0.718
AAI29577 Xenopus laevis AAI29577 I 0.704
AAI29698 Xenopus laevis AAI29698 I 0.718
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.761
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.718
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.718
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.718
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.704
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.704
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.704
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.746
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.732
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.718
RBM42 Canis familiaris ENSCAFG00000006925 I 0.718
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.718
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.718
rbm42 Danio rerio ENSDARG00000039910 I 0.704
LOC100051102 Equus caballus ENSECAG00000018215 I 0.718
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.718
RBM42 Homo sapiens ENSG00000126254 D 0.718
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.718
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.718
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.718
RBM42 Microcebus murinus ENSMICG00000009880 I 0.718
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.718
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.718
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.718
Rbm42 Mus musculus ENSMUSG00000036733 I 0.718
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.718
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.718
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.718
RBM42 Oryzias latipes ENSORLG00000003387 I 0.718
RBM42 Procavia capensis ENSPCAG00000013053 I 0.718
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.718
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.718
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.718
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.718
RBM42 Sorex araneus ENSSARG00000010724 I 0.718
RBM42 Sus scrofa ENSSSCG00000002905 I 0.718
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.718
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.718
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.718
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.718
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.718
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.803
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.803
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.732
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.718
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.775
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.704
GP3.076550 Batrachochytrium dendrobatidis GP3.076550 I 0.704
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.718
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.732
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.718
MDP0000283678 Malus x domestica MDP0000283678 I 0.704
MDP0000320908 Malus x domestica MDP0000320908 I 0.704
PHUM106890 Pediculus humanus PHUM106890 I 0.732
ppa010477m Prunus persica ppa010477m I 0.704
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.718
SB04G026430 Sorghum bicolor Sb04g026430 I 0.704
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.746
XP_001184429.1 Strongylocentrotus purpuratus XP_001184429.1 N 0.704
XP_001191950.1 Strongylocentrotus purpuratus XP_001191950.1 N 0.704
XP_784687.2 Strongylocentrotus purpuratus XP_784687.2 N 0.704
XP_786306.2 Strongylocentrotus purpuratus XP_786306.2 N 0.704