CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMLUG00000003461
(
Myotis lucifugus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMLUG00000003461
T00549_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000003143
CCCH ZF
138
160
HICSFWVKGECKRGEECPYRHEK
ENSMLUP00000003143
RRM
209
274
LYVGGLGNTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLH
Links
Other
CCCH ZF,RRM
family RBPs
Other
Myotis lucifugus
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ014747
Culex pipiens
CpipJ_CPIJ014747
N
0.000
GD19696
Drosophila simulans
FBgn0191187
N
0.000
GJ14294
Drosophila virilis
FBgn0201509
N
0.000
GK11018
Drosophila willistoni
FBgn0213029
N
0.000
GE25369
Drosophila yakuba
FBgn0242446
N
0.000
ISCW021094
Ixodes scapularis
ISCW021094
N
0.722
PHUM268310
Pediculus humanus
PHUM268310
N
0.722
e_gw1.462.21.1
Capitella teleta
e_gw1.462.21.1
N
0.747
estExt_fgenesh2_pm.C_1790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1790010
N
0.800
estExt_Genewise1Plus.C_940087
Daphnia pulex
estExt_Genewise1Plus.C_940087
N
0.000
gw.351.5.1
Nematostella vectensis
gw.351.5.1
N
0.700
GM10722
Drosophila sechellia
FBgn0165668
N
0.000
GL12337
Drosophila persimilis
FBgn0149944
N
0.000
amel4_ncbi_hmm34588
Apis mellifera
amel4_ncbi_hmm34588
N
0.733
nasonia_NCBI_hmm370054
Nasonia vitripennis
nasonia_NCBI_hmm370054
N
0.000
AAEL011251
Aedes aegypti
AAEL011251
N
0.000
AGAP004509
Anopheles gambiae
AGAP004509
N
0.000
CPIJ014747
Culex quinquefasciatus
CPIJ014747
N
0.000
CG14641
Drosophila melanogaster
FBgn0037220
N
0.000
GA13140-RA
Drosophila pseudoobscura
FBgn0073177
N
0.000
GF17279
Drosophila ananassae
FBgn0094297
N
0.000
GH21879
Drosophila grimshawi
FBgn0129340
N
0.000
GI21935
Drosophila mojavensis
FBgn0144664
N
0.000
gw.38.22.1
Branchiostoma floridae
gw.38.22.1
N
0.800