fgenesh1_pg.C_scaffold_49000019 (Mycosphaerella fijiensis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pg.C_scaffold_49000019 T00935_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_49000019 CCCH ZF 13 39
fgenesh1_pg.C_scaffold_49000019 RRM 72 134
fgenesh1_pg.C_scaffold_49000019 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Mycosphaerella fijiensis RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28A Homo sapiens ENSG00000131914 D 0.000
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.000
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.000
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.000
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.000
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.000
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.000
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.000
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.000
LIN28A Procavia capensis ENSPCAG00000013674 I 0.000
LIN28A Oryzias latipes ENSORLG00000014369 I 0.000
LIN28B Oryzias latipes ENSORLG00000012891 I 0.000
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.000
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.000
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.000
Q8JHC4 Xenopus laevis Q8JHC4 I 0.000
LIN28B Sorex araneus ENSSARG00000008374 I 0.000
LIN28A Sus scrofa ENSSSCG00000003557 I 0.000
Q8AVK2 Xenopus laevis Q8AVK2 I 0.000
AAM77750 Xenopus laevis AAM77750 I 0.000
AAI69625 Xenopus laevis AAI69625 I 0.000
AAI69597 Xenopus laevis AAI69597 I 0.000
AAH42225 Xenopus laevis AAH42225 I 0.000
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.000
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.000
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.000
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.000
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.000
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.000
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.000
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.000
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.000
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.000
Lin28b Mus musculus ENSMUSG00000063804 I 0.000
Lin28a Mus musculus ENSMUSG00000050966 I 0.000
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.000
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.000
LOC100066260 Equus caballus ENSECAG00000020994 I 0.000
LIN28 Equus caballus ENSECAG00000020267 I 0.000
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.000
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.000
lin28a Danio rerio ENSDARG00000016999 I 0.000
LIN28A Danio rerio ENSDARG00000004328 I 0.000
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.000
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.000
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.000
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.000
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.000
LIN28A Canis familiaris ENSCAFG00000012488 I 0.000
LIN28B Canis familiaris ENSCAFG00000003598 I 0.000
LIN28A Bos taurus ENSBTAG00000040497 I 0.000
LIN28B Echinops telfairi ENSETEG00000015340 I 0.000
LIN28A Felis catus ENSFCAG00000012810 I 0.000
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.000
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.000
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.000
LIN28B Microcebus murinus ENSMICG00000002297 I 0.000
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.000
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.000
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.000
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.000
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.000
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.000
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.000
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.000
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.000
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.000
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.000
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.000
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.000