CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

nasonia_NCBI_hmm9264 *(Nasonia vitripennis)* CCCH ZF
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00642 (zf-CCCH)	IPR000571	nasonia_NCBI_hmm9264	T01841_0.6	DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
ZFP36 M266_0.6	Homo sapiens	Sequence logo not available	UUGUGS	RIP-chip Cook et al.(2011) 193_18367721.3	0.722
ZFP36 M265_0.6	Homo sapiens	Sequence logo not available	CUUGU	RIP-chip Cook et al.(2011) 193_18367721.2	0.722
ZFP36 M264_0.6	Homo sapiens	Sequence logo not available	HCYUBY	RIP-chip Cook et al.(2011) 193_18367721.1	0.722
ZFP36 M263_0.6	Homo sapiens	Sequence logo not available	AAUAA	RIP-chip Cook et al.(2011) 193_18367721	0.722
ZFP36 M350_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 951_12324455	0.722
ZFP36 M269_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 221_12324455	0.722
ZFP36 M268_0.6	Homo sapiens	Sequence logo not available	AUUUA	RIP-chip Cook et al.(2011) 194_18256032.1	0.722
ZFP36 M267_0.6	Homo sapiens	Sequence logo not available	UUAUUUAUU	RIP-chip Cook et al.(2011) 194_18256032	0.722
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
nasonia_NCBI_hmm9264	CCCH ZF	68	94	YKTELCRPFEESGSCKYGDKCQFAHGY
nasonia_NCBI_hmm9264	CCCH ZF	106	132	YKTELCRTFHKIGFCPYGPRCHFVHNF

Links
Other CCCH ZF family RBPs
Other *Nasonia vitripennis* RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
estExt_fgenesh1_kg.C_10023	Schizophyllum commune	estExt_fgenesh1_kg.C_10023	N	0.000
gww2.22.64.1	Phanerochaete chrysosporium	gww2.22.64.1	N	0.000
estExt_Genewise1.C_140389	Agaricus bisporus	estExt_Genewise1.C_140389	N	0.000
gw1.4.522.1	Heterobasidion annosum	gw1.4.522.1	N	0.000